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AT5G14050.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Transducin/WD40 repeat-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: TBP-associated factor 5 (TAIR:AT5G25150.1); Has 6115 Blast hits to 4690 proteins in 400 species: Archae - 26; Bacteria - 2036; Metazoa - 1593; Fungi - 1149; Plants - 369; Viruses - 2; Other Eukaryotes - 940 (source: NCBI BLink).
Protein Annotations
BioGrid:16532eggNOG:ENOG410YBWPeggNOG:KOG2055EMBL:AB007650
EMBL:AY075678EMBL:AY133634EMBL:CP002688EnsemblPlants:AT5G14050
EnsemblPlants:AT5G14050.1entrez:831254Gene3D:2.130.10.10GeneID:831254
Genevisible:Q9FMU5GO:GO:0005730GO:GO:0006364GO:GO:0080008
Gramene:AT5G14050.1hmmpanther:PTHR18359HOGENOM:HOG000242429InParanoid:Q9FMU5
IntAct:Q9FMU5InterPro:IPR001680InterPro:IPR015943InterPro:IPR017986
InterPro:IPR019775iPTMnet:Q9FMU5KEGG:ath:AT5G14050KO:K14553
MINT:MINT-8062193ncoils:CoilOMA:RTRKCIHPaxDb:Q9FMU5
Pfam:PF00400Pfam:Q9FMU5Pfscan:PS50082Pfscan:PS50294
PhylomeDB:Q9FMU5PRIDE:Q9FMU5PRO:PR:Q9FMU5PROSITE:PS00678
PROSITE:PS50082PROSITE:PS50294ProteinModelPortal:Q9FMU5Proteomes:UP000006548
RefSeq:NP_196909.1scanprosite:PS00678SMART:SM00320SMR:Q9FMU5
STRING:3702.AT5G14050.1SUPFAM:SSF50978TAIR:AT5G14050UniGene:At.31984
UniProt:Q9FMU5
Coordinates (TAIR10) chr5:+:4533539..4535179
Molecular Weight (calculated) 60991.70 Da
IEP (calculated) 5.28
GRAVY (calculated) -0.61
Length 546 amino acids
Sequence (TAIR10)
(BLAST)
001: MSLSQNAPKS KGIKREELKK QYEDVEDEEE IGSDDDLTRG KRRKTEKEKQ KLEESELVEM KKLENLIFGS LYSPVTFGKE EEEDGSALFH VDRSAVRQIP
101: DYEDDGDDDE ELSDEENGQV VAIRKGEAAW EDEEEKQINV DIASVNRLRK LRKEENEGLI SGSEYIARLR AHHAKLNPGT DWARPDSQIV DGESSDDDDT
201: QDGGVDDILR TNEDLVVKSR GNKLCAGRLE YSKLVDANAA DPSNGPINSV HFHQNAQLLL TAGLDRRLRF FQIDGKRNTK IQSIFLEDCP IRKAAFLPNG
301: SQVIVSGRRK FFYSFDLEKA KFDKIGPLVG REEKSLEYFE VSQDSNTIAF VGNEGYILLV STKTKELIGT LKMNGSVRSL AFSEDGKHLL SSGGDGQVYV
401: WDLRTMKCLY KGVDEGSTCG TSLCSSLNGA LFASGTDRGI VNIYKKSEFV GGKRKPIKTV DNLTSKIDFM KFNHDAQILA IVSTMNKNSV KLVHVPSLTV
501: FSNWPPPNST MHYPRCLDFS PGSGFMAMGN AAGKVLLYKL HHYQNA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)