AT5G14050.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Transducin/WD40 repeat-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: TBP-associated factor 5 (TAIR:AT5G25150.1); Has 6115 Blast hits to 4690 proteins in 400 species: Archae - 26; Bacteria - 2036; Metazoa - 1593; Fungi - 1149; Plants - 369; Viruses - 2; Other Eukaryotes - 940 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr5:+:4533539..4535179 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 60991.70 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 5.28 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.61 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 546 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MSLSQNAPKS KGIKREELKK QYEDVEDEEE IGSDDDLTRG KRRKTEKEKQ KLEESELVEM KKLENLIFGS LYSPVTFGKE EEEDGSALFH VDRSAVRQIP 101: DYEDDGDDDE ELSDEENGQV VAIRKGEAAW EDEEEKQINV DIASVNRLRK LRKEENEGLI SGSEYIARLR AHHAKLNPGT DWARPDSQIV DGESSDDDDT 201: QDGGVDDILR TNEDLVVKSR GNKLCAGRLE YSKLVDANAA DPSNGPINSV HFHQNAQLLL TAGLDRRLRF FQIDGKRNTK IQSIFLEDCP IRKAAFLPNG 301: SQVIVSGRRK FFYSFDLEKA KFDKIGPLVG REEKSLEYFE VSQDSNTIAF VGNEGYILLV STKTKELIGT LKMNGSVRSL AFSEDGKHLL SSGGDGQVYV 401: WDLRTMKCLY KGVDEGSTCG TSLCSSLNGA LFASGTDRGI VNIYKKSEFV GGKRKPIKTV DNLTSKIDFM KFNHDAQILA IVSTMNKNSV KLVHVPSLTV 501: FSNWPPPNST MHYPRCLDFS PGSGFMAMGN AAGKVLLYKL HHYQNA |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)