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AT2G06990.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RNA helicase, ATP-dependent, SK12/DOB1 protein
Curator
Summary (TAIR10)
encodes a putative DExH-box RNA helicase that acts redundantly with HEN1, HUA1, and HUA2 in the specification of floral organ identity in the third whorl.
Computational
Description (TAIR10)
hua enhancer 2 (HEN2); CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DSH, C-terminal (InterPro:IPR012961), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), RNA helicase, ATP-dependent, SK12/DOB1 (InterPro:IPR016438), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: RNA helicase, ATP-dependent, SK12/DOB1 protein (TAIR:AT1G59760.1); Has 9841 Blast hits to 8173 proteins in 1240 species: Archae - 753; Bacteria - 3176; Metazoa - 1197; Fungi - 1159; Plants - 489; Viruses - 32; Other Eukaryotes - 3035 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1155-MONOMEREC:3.6.4.13eggNOG:COG4581eggNOG:KOG0948
EMBL:AC005171EMBL:AY050658EMBL:BT005794EMBL:CP002685
EnsemblPlants:AT2G06990EnsemblPlants:AT2G06990.1entrez:815269Gene3D:3.40.50.300
GeneID:815269Genevisible:Q9ZVW2GO:GO:0003723GO:GO:0003724
GO:GO:0005524GO:GO:0005634GO:GO:0005654GO:GO:0005829
GO:GO:0006397GO:GO:0006401GO:GO:0010093GO:GO:0016070
GO:GO:0016607GO:GO:0060149Gramene:AT2G06990.1HOGENOM:HOG000163047
IntAct:Q9ZVW2InterPro:IPR001650InterPro:IPR011545InterPro:IPR012961
InterPro:IPR014001InterPro:IPR016438InterPro:IPR025696InterPro:IPR027417
iPTMnet:Q9ZVW2KEGG:ath:AT2G06990KO:K12598ncoils:Coil
OMA:KDDRGICPaxDb:Q9ZVW2Pfam:PF00270Pfam:PF00271
Pfam:PF08148Pfam:PF13234Pfam:Q9ZVW2Pfscan:PS51192
Pfscan:PS51194PhylomeDB:Q9ZVW2PIR:B84481PIRSF:PIRSF005198
PRO:PR:Q9ZVW2PROSITE:PS51192PROSITE:PS51194ProteinModelPortal:Q9ZVW2
Proteomes:UP000006548RefSeq:NP_565338.1SMART:SM00487SMART:SM00490
SMART:SM01142SMR:Q9ZVW2STRING:3702.AT2G06990.1SUPFAM:SSF52540
TAIR:AT2G06990tair10-symbols:HEN2UniGene:At.20667UniProt:Q9ZVW2
Coordinates (TAIR10) chr2:+:2895135..2900909
Molecular Weight (calculated) 111896.00 Da
IEP (calculated) 6.40
GRAVY (calculated) -0.32
Length 995 amino acids
Sequence (TAIR10)
(BLAST)
001: MSAQMEEPET LGKRKESESS KLRSDETPTP EPRTKRRSLK RACVHEVAVP NDYTPTKEET IHGTLDNPVF NGDMAKTYPF KLDPFQSVSV ACLERKESIL
101: VSAHTSAGKT AVAEYAIAMA FRDKQRVIYT SPLKALSNQK YRELQHEFKD VGLMTGDVTL SPNASCLVMT TEILRAMLYR GSEVLKEVAW VIFDEIHYMK
201: DRERGVVWEE SIIFLPPAIK MVFLSATMSN ATEFAEWICY LHKQPCHVVY TDFRPTPLQH YAFPMGGGGL YLVVDDNEQF REDSFVKMQD TFPKPKSNDG
301: KKSANGKSGG RGAKGGGGPG DSDVYKIVKM IMERKFEPVI IFSFSRRECE QHALSMSKLD FNTDEEKEVV EQVFNNAMQC LNEEDRSLPA IELMLPLLQR
401: GIAVHHSGLL PVIKELVELL FQEGLVKALF ATETFAMGLN MPAKTVVFTA VKKWDGDSHR YIGSGEYIQM SGRAGRRGKD ERGICIIMID EQMEMNTLRD
501: MMLGKPAPLL STFRLSYYTI LNLLSRAEGQ FTAEHVIRHS FHQFQHEKAL PDIGNKVSKL EEEAAILNAS GEAEVAEYHN LQFDIAKHEK KLMSEIIRPE
601: RVLCFLDTGR LVKIREGGTD WGWGVVVNVV KNSSVGTGSA SSHGGGYIVD TLLHCSTGFS ENGAKPKPCP PRAGEKGEMH VVPVQLPLIS ALSRLRISVP
701: SDLRPVEARQ SILLALQELS SRFPLGFPKL HPVKDMNIQD TEIVDLVSQI EEVEQKLLAH PMHKSEDDQQ IKSFQRKAEV NYEIQQLKSK MRDSQLQKFR
801: DELKNRSRVL KKLGHIDADG VVQVKGRAAC LIDTGDELLV TELMFNGTFN DLDHHQVAAL ASCFIPVDKS NEQVNLRNEL TKPLQQLQDS ARKIAEIQHE
901: CKLEIDVEEY VESTIRPFLM DVIYSWSKGA SFAEIIQMTD IFEGSIIRSA RRLDEFLNQL RAAAEAVGES SLESKFAAAS ESLRRGIMFA NSLYL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)