AT1G67210.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: PSP, proline-rich (InterPro:IPR006568), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein (TAIR:AT5G38600.1); Has 197 Blast hits to 197 proteins in 73 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 6; Plants - 67; Viruses - 4; Other Eukaryotes - 16 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:25141339..25143774 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 45648.80 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.78 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.85 | ||||||||||||||||||||||||||||||||
| Length | 405 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAASSGSGLE AEEGEISIDM EEDMDLTEDD FRNVSGQFSG QASIVEVGDA VDVRVETVKV DVSSKSGVKR ARTISLEQQP SVHVTYKHLT RDSKQKLESL 101: LQQWSEWEAE QNSLSEDQEQ VLEAGDETYF PALRVGLQKT SSVSFWFDYQ TGHSSSKKSV PVESSTTPLY NRGFTIGLDS GSNNVEGGLE IIDDPPRCFN 201: CGAYSHSIRE CPRPFDRSAV SNARRQHKRK RNQTPGSRLP SRYYQSLQRG KYDGLKPGSL DAETRKLLGL KELDPPPWLN RMREIGYPPG YFAVEEDDDD 301: HSRITIFGEE ETKEEEEVKT EEGEILEKAS PQEPRKIMTV GFPGINAPIP ENADSWLWEQ RNSNTGHTNY HNHLRPQYEM GPLGIQLSSS FPPMHGIRYD 401: HRFGL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)