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AT3G07530.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.940
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CONTAINS InterPro DOMAIN/s: Beta-Casp domain (InterPro:IPR022712); BEST Arabidopsis thaliana protein match is: cleavage and polyadenylation specificity factor 73 kDa subunit-II (TAIR:AT2G01730.1); Has 624 Blast hits to 615 proteins in 160 species: Archae - 54; Bacteria - 6; Metazoa - 333; Fungi - 44; Plants - 93; Viruses - 0; Other Eukaryotes - 94 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XYHNeggNOG:KOG1138EMBL:CP002686EnsemblPlants:AT3G07530
EnsemblPlants:AT3G07530.1entrez:819942Gene3D:3.60.15.10GeneID:819942
GO:GO:0016180GO:GO:0032039Gramene:AT3G07530.1hmmpanther:PTHR11203
hmmpanther:PTHR11203:SF2InParanoid:F4JEH2InterPro:IPR001279InterPro:IPR022712
InterPro:IPR027074KEGG:ath:AT3G07530KO:K13146OMA:DRSERHL
PANTHER:PTHR11203:SF2PaxDb:F4JEH2Pfam:PF10996PRIDE:F4JEH2
ProteinModelPortal:F4JEH2Proteomes:UP000006548RefSeq:NP_187409.2SMART:SM01027
STRING:3702.AT3G07530.1SUPFAM:SSF56281TAIR:AT3G07530UniGene:At.53215
UniProt:F4JEH2
Coordinates (TAIR10) chr3:+:2400793..2404280
Molecular Weight (calculated) 77190.10 Da
IEP (calculated) 4.98
GRAVY (calculated) 0.00
Length 699 amino acids
Sequence (TAIR10)
(BLAST)
001: MELTCLSKGD GFHYPPCHML NLCGFRILID CPLDLSAIKI FSPVPSGVGS EASEYLSDES LDAQNPIQKK QKLERQLTCA DLVCEEPWYK TVKALHLWEA
101: SFIDIVLISN PMGLLGLPFL TQNPGFFAKI YMTEVTAKIG QLMMEDIVSM HKEFRCFHGP DNSSFPGWIK NLDSEQVPAL LKKVVFGESG DDLGSWMRLY
201: SLDDIESCMK KVQGVKFAEE VCYNGTLIIK ALSSGLDIGA CNWLINGPNG SLSYVSDSIF VSHHARSFDF HGLKETDVLI YSDFSSLQSA EVTEDGCISP
301: DSDNNYISTI SDNKDSLLNT EDSLEEMEKL AFVCSCAAES ADAGGSTLIT ITRIGIVLQL LELLSNSLES SSLKVPIFVI SSVAEELLAY TNTIPEWLCE
401: QRQEKLISGE PSFGHLKFIK NKKIHLFPAI HSPNLIYANR TSWQEPCIVF ASHWSLRLGP SVQLLQRWRG DPKSLLVLED GISSGLGLLP FRPIAMKILQ
501: CSFLSGIRLQ KLPTLVSVLQ PKIFLVPDAV NQRISLAAIK TISILNYFEN KTLHVPRIVD NPSVEITTDL ASKLSWRKLR QRESFGIARL KGGLLMEDGK
601: HRLVSGLEQE ESSGKARPLR HWGSVAPELL LDALLKMGIK GSIEQSTGDN GSEDKSIIHI ENPNSGLIEF SEMGTAIITG DENVVSQVFQ AIDGVLDGI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)