AT1G04390.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.636 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : BTB/POZ domain-containing protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
BTB/POZ domain-containing protein; CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210); Has 143 Blast hits to 130 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 38; Fungi - 0; Plants - 104; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:1179678..1183615 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 95625.60 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.87 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.05 | ||||||||||||||||||||||||||||||||||||
| Length | 849 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASSKGGNTT AHINTLHHRL YHALNLGFRV CDEKEKKWKC TDIEIQRHVV KSISAFLDCF SRATANNRLI KDSISDIAGA LVFILGSKNR AVVGLAANVV 101: IRLIRIVPPS ILHSYSLDLV ESLSPLLCCQ QFDVSLPCAV ALNAILVNVR ETKEKEVWKI LEDEKTVVSV VGNLQIFSEG SMSVEWFQEM ALLLSTIMLK 201: WPQSRYSVWN NPALMGVLES VSQKPDMGLT VATLKLYSSL ALCGHGANEL LDNGKPMLDM MISCMEESSS QNARIEGLKL AQRLAATVRT MGKWFLSSGK 301: LELDQMSLLV EACKLALITR WEGQHHIYFW KYRISEALLS LVVENFHSQS LDGYVSLEEE VLVAEKRVSI KSSANDDMFS LQIHIIEGPS YPVIYPRRRC 401: WYQRNWENIG ASSFAPSSQS ITEKRICCWV CTEDWDNKDA FLLYALLALA ELVNHSFFGQ NHAEELSMKS GNLKDRLCTT LKEIRDGTYG SGPRWYAAHI 501: LSYFGYYGFE HKLGKRLMCA YEDEEYSDMR LLFASGNSAS VNKVIIAVRC PMLLPPKEGA HSSSTISTEK SQRTVQEIRM SANVDILALV KLLEFAYSGY 601: VEVESTTLKK LKPLAKHCKA KVLLQMLCRR RPKWGSSIPE IDIPLALTPK LIHFSDVILV PKETNVACFN CRMCSLTSPH AHSHRVILSS GCEYLRALFR 701: SGMQESHLDR LNVPVSWLGL TKLVSWFYSD ELPKPPSGCK WNNMDTEAKL DELQAYVEIY SLSEWWIMEE LQNDCAHVIL SCLESARELS IKTIELAASF 801: SMWKLVEAAA NHAAPIYHQL RDSGELDELD DELVNLIRTA AVQFSQQGG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)