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AT3G53090.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plasma membrane 0.943
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ubiquitin-protein ligase 7
Curator
Summary (TAIR10)
encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis.
Computational
Description (TAIR10)
ubiquitin-protein ligase 7 (UPL7); CONTAINS InterPro DOMAIN/s: HECT (InterPro:IPR000569), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: ubiquitin protein ligase 6 (TAIR:AT3G17205.3); Has 4481 Blast hits to 4316 proteins in 248 species: Archae - 0; Bacteria - 0; Metazoa - 2549; Fungi - 797; Plants - 365; Viruses - 0; Other Eukaryotes - 770 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1343-MONOMERBioCyc:ARA:GQT-1344-MONOMEREC:6.3.2.-eggNOG:COG5021
eggNOG:KOG4427EMBL:AK227125EMBL:AL132958EMBL:CP002686
EnsemblPlants:AT3G53090EnsemblPlants:AT3G53090.1EnsemblPlants:AT3G53090.2entrez:824475
GeneID:824475Genevisible:Q9SCQ2GO:GO:0004842GO:GO:0016874
GO:GO:0042787Gramene:AT3G53090.1Gramene:AT3G53090.2hmmpanther:PTHR11254
HOGENOM:HOG000006040InParanoid:Q9SCQ2InterPro:IPR000048InterPro:IPR000569
KEGG:00220+6.3.2.-KEGG:00261+6.3.2.-KEGG:00380+6.3.2.-KEGG:ath:AT3G53090
KO:K10588ncoils:CoilOMA:IPDLCKRPaxDb:Q9SCQ2
Pfam:PF00632Pfam:Q9SCQ2Pfscan:PS50096Pfscan:PS50237
PhylomeDB:Q9SCQ2PIR:T46155PRIDE:Q9SCQ2PRO:PR:Q9SCQ2
PROSITE:PS50096PROSITE:PS50237ProteinModelPortal:Q9SCQ2Proteomes:UP000006548
RefSeq:NP_001030850.1RefSeq:NP_190877.1SMART:SM00119SMR:Q9SCQ2
STRING:3702.AT3G53090.1SUPFAM:SSF56204TAIR:AT3G53090tair10-symbols:UPL7
UniGene:At.35229UniPathway:UPA00143UniProt:Q9SCQ2
Coordinates (TAIR10) chr3:+:19679273..19684453
Molecular Weight (calculated) 128493.00 Da
IEP (calculated) 7.77
GRAVY (calculated) -0.11
Length 1142 amino acids
Sequence (TAIR10)
(BLAST)
0001: MDLNRKHKVS LRGASSGEIS RDALLAKVSQ ERELRSYARR ANAASLFIQR VWRSYIVRKK AAIEIQEEWE NLLSCHSVTL TKSWVSSRVL RPFLFFVRSL
0101: SVQHQKIQAR EIHCMQTCFK ILLESINSND QGYNFCSLAV GTSEDSKTWA CQTRRMVSLC SFLLTECNYS QERIKDVIGV NALLLRILIV LTDPKSWKII
0201: TNENFEDAET AKKIIIQFIG SCKSGYYSAV RRYIKTLTKH TDERLVITTS AVTLALRPFH VKQPAFVDDN QPDTNLAVEE YVSLILTIPR LVCYLPSALI
0301: RALKHKSILM PSFHTILLLK DKILNIISEM ENSEKQSCTM EIPSVGWVIG NIISLATVSE TDFMDPQESN PEMFYVLYVH VIVTLAENLL SQVESVGIQD
0401: IHLDIEATSN ETEKGNSVKI SFVEMLRPVC QQWHLAKLLA ASGKEIRVIA DKDASTSSKK GSETLGLLDI ARLYSCMLRI FCVMNPVLGP LPVLNMLSFC
0501: PGYIVSLWNS LESVLLPENG CTADDASHGS AKTSWNTRSP SEKKLKHLKN DSVNKWVNVL NKFSGKSPGP REHVECTSDQ PGSGQVNEST NDVWDVETLR
0601: GGPVGISKEV SCLLHLFCAT YAHLLVVLDD IQFYEKQVPF MLEKQQRIAS MLNTLVYYGL LRGTGPESRQ LMDSAIRCLH LLYERDCRHP FCASALWLSP
0701: GRTSRPPIAF AARTHEVLPT SDVLTTPSMG SVITITPHVF PFEERVHVFR EFISKDKASR KMAGEVDAPG ARSIEIVVRR GHVVEDGFQQ LNSIGSRLKS
0801: SIHVSFVNES GLPEAGLDYG GLSKEFLTDI TKAAFATEYG LFSQTPTSDR LLVPSPSARH LENGIQMIEF LGRIVGKALY EGILLDYSFS HVFIQKLLGR
0901: YSFIDELSGL DPELYRNLMY VKHYDGDLKE LCLDFTVTEE FCGKMSIIEL KPGGKDTSVT NENKMQYIHA MADYKLNRQI VPFSNAFYRG LTDLISPAWL
1001: KLFNAHEFNQ LLSGGNHDID VDDLRRNTKY TGGYSDSSRT IKIFWEVMKG FEPSERCLLL KFVTSCSRAP LLGFKYLQPT FIIHKVSCDT SLWAAIGGQD
1101: VERLPSASTC YNTLKLPTYK RASTMREKLL YAITSNAGFE LS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)