AT3G53090.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plasma membrane 0.943 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : ubiquitin-protein ligase 7 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
ubiquitin-protein ligase 7 (UPL7); CONTAINS InterPro DOMAIN/s: HECT (InterPro:IPR000569), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: ubiquitin protein ligase 6 (TAIR:AT3G17205.3); Has 4481 Blast hits to 4316 proteins in 248 species: Archae - 0; Bacteria - 0; Metazoa - 2549; Fungi - 797; Plants - 365; Viruses - 0; Other Eukaryotes - 770 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr3:+:19679273..19684453 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 128493.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 7.77 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.11 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 1142 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
0001: MDLNRKHKVS LRGASSGEIS RDALLAKVSQ ERELRSYARR ANAASLFIQR VWRSYIVRKK AAIEIQEEWE NLLSCHSVTL TKSWVSSRVL RPFLFFVRSL 0101: SVQHQKIQAR EIHCMQTCFK ILLESINSND QGYNFCSLAV GTSEDSKTWA CQTRRMVSLC SFLLTECNYS QERIKDVIGV NALLLRILIV LTDPKSWKII 0201: TNENFEDAET AKKIIIQFIG SCKSGYYSAV RRYIKTLTKH TDERLVITTS AVTLALRPFH VKQPAFVDDN QPDTNLAVEE YVSLILTIPR LVCYLPSALI 0301: RALKHKSILM PSFHTILLLK DKILNIISEM ENSEKQSCTM EIPSVGWVIG NIISLATVSE TDFMDPQESN PEMFYVLYVH VIVTLAENLL SQVESVGIQD 0401: IHLDIEATSN ETEKGNSVKI SFVEMLRPVC QQWHLAKLLA ASGKEIRVIA DKDASTSSKK GSETLGLLDI ARLYSCMLRI FCVMNPVLGP LPVLNMLSFC 0501: PGYIVSLWNS LESVLLPENG CTADDASHGS AKTSWNTRSP SEKKLKHLKN DSVNKWVNVL NKFSGKSPGP REHVECTSDQ PGSGQVNEST NDVWDVETLR 0601: GGPVGISKEV SCLLHLFCAT YAHLLVVLDD IQFYEKQVPF MLEKQQRIAS MLNTLVYYGL LRGTGPESRQ LMDSAIRCLH LLYERDCRHP FCASALWLSP 0701: GRTSRPPIAF AARTHEVLPT SDVLTTPSMG SVITITPHVF PFEERVHVFR EFISKDKASR KMAGEVDAPG ARSIEIVVRR GHVVEDGFQQ LNSIGSRLKS 0801: SIHVSFVNES GLPEAGLDYG GLSKEFLTDI TKAAFATEYG LFSQTPTSDR LLVPSPSARH LENGIQMIEF LGRIVGKALY EGILLDYSFS HVFIQKLLGR 0901: YSFIDELSGL DPELYRNLMY VKHYDGDLKE LCLDFTVTEE FCGKMSIIEL KPGGKDTSVT NENKMQYIHA MADYKLNRQI VPFSNAFYRG LTDLISPAWL 1001: KLFNAHEFNQ LLSGGNHDID VDDLRRNTKY TGGYSDSSRT IKIFWEVMKG FEPSERCLLL KFVTSCSRAP LLGFKYLQPT FIIHKVSCDT SLWAAIGGQD 1101: VERLPSASTC YNTLKLPTYK RASTMREKLL YAITSNAGFE LS |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)