AT5G06120.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 0.997 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ARM repeat superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
ARM repeat superfamily protein; FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport, protein import into nucleus, docking; LOCATED IN: nucleus, nuclear pore, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Importin-beta, N-terminal (InterPro:IPR001494), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G04490.1); Has 572 Blast hits to 534 proteins in 126 species: Archae - 0; Bacteria - 0; Metazoa - 294; Fungi - 0; Plants - 114; Viruses - 0; Other Eukaryotes - 164 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:1844797..1852601 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 121195.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.64 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.02 | ||||||||||||||||||||||||||||||||
| Length | 1066 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MQNSALLPME SLAQLEAMCE RLYNSQDSAE RAHAENSLRC FSVNTDYISQ CQYILDNSSK PYSLMLASSS LLKQVTDHTL PLNLRLDIRA YIVNYLATRG 0101: PKMQSFVIAS LIQLLCRLTK FGWLDDDRFR DVVKESTNFL EQGSSDHYAI GLRILDQLVQ EMNQPNPGLP STHHRRVACN FRDQSLFQVF RIALTSLSYL 0201: KNDAAGRLQE LALSLALRCV SFDFVGTSID ESTEEFGTVQ IPTSWRSVLE DSSTLQIFFD YYGSTESPLS KEALECLVRL ASVRRSLFTN DATRSNFLAH 0301: LMTGTKEILQ TGKGLADHDN YHVFCRLLGR FRLNYQLSEL VKMEGYGEWI QLVAEFTLKS LQSWQWASSS VYYLLGMWSR LVASVPYLKG DSPSLLDEFV 0401: PKITEGFIIS RFNSVQASVP DDPTDHPLDK VEVLQDELDC FPYLCRFQYE RTGMYIINTM EPLLQSYTER GQLQFADNSE LALIEAKLSW IVHIVAAIVK 0501: IKQCSGCSVE TQEVLDAELS ARVLRLVNVM DSGLHRQRYG EISKQRLDRA ILTFFQNFRK SYVGDQAMHS SKLYARLKEL LGLHDHLVLL NVIVGKIATN 0601: LKCYTESEEV INHTLSLFLE LASGYMTGKL LLKLDTVTFI ISNHTREQFP FLEEYRCSRS RTTFYYTIGW LIFMEDSLIK FKTSMEPLLQ VFRTLESTPD 0701: SMFRTDAVKF ALIGLMRDLR GIAMATSSRR SYGFLFDWLY PAHMPLLLRG VSHWFDTPEV TTPLLKFMAE FVHNKTQRLT FDSSSPNGIL LFREVSKLIV 0801: AYGSRILALP NVADIYAFKY KGIWVSLTIL SRALSGNYCN FGVFELYGDR ALADALDIAL KMTLAIPLAD ILAYRKLTKA YFGFVEVLCA SHITFILKLD 0901: TATFMHLVGS LESGLKGLDT SISSQCAIAV DNLASYYFNN ITMGEAPTTP AAIRFAQHIA DCPSLFPEIL KTLFEIVLFE DCGNQWSLSR PMLSLILISE 1001: QIFSDLKAKI LSSQSIILMV QPADQHQRLS ACFDSLMTDI SRGLDSKNRD KFTQNLTLFR HEFRVK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)