AT1G50410.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related; FUNCTIONS IN: helicase activity, DNA binding, zinc ion binding, nucleic acid binding, ATP binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (TAIR:AT3G20010.1); Has 25748 Blast hits to 15874 proteins in 1868 species: Archae - 87; Bacteria - 8136; Metazoa - 6127; Fungi - 5385; Plants - 2378; Viruses - 150; Other Eukaryotes - 3485 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:+:18672828..18677365 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 108117.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 7.26 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.55 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 981 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MDSAIDISSD SDVEIQETRT RPQHPPRIAE GSHRRDLSTL RPHFLSGSSS GANGHTKTGL TNLDSRNGFE SKPLPRAEHH THIPGNGSIV TSRIPNISVG 101: DYEKFSSQQA FKRTHPPTFS RPPFPPRPDI GTSNGNASHF RGGAHDDLGM GRVTNGTRIL PPSVAHGTSA SPSHFNGLSD PMHRNGIGEE RNSENDERLI 201: YQAALQELNQ PKSEVDLPAG LLSVPLMKHQ KIALAWMFQK ETNSLHCMGG ILADDQGLGK TVSTIALILK QMHEAKLKSK NSGNQEAEAL DLDADDESEN 301: AFEKPESKAS NGSGVNGDSG IKKAKGEEAS TSTRKFNRKR PAAGTLIVCP ASVVRQWARE LDEKVTDEAK LSVLIYHGGN RTKDPIELAK YDVVMTTYAI 401: VSNEVPKQPL VDDDENDEKN SEKYGLASGF SINKKRKNVV GTTKKSKKKK GNNNAGDSSD PDSGTLAKVG WFRVVLDEAQ TIKNHRTQVA RACCGLRAKR 501: RWCLSGTPIQ NTIDDLYSYF RFLKYDPYAV YKSFCHQIKG PISRNSLQGY KKLQAVLRAI MLRRTKGTLL DGQPIINLPP KTINLSQVDF SVEERSFYVK 601: LESDSRSQFK AYAAAGTLNQ NYANILLMLL RLRQACDHPQ LVKRYNSDSV GKVSEEAVKK LPKEDLVSLL SRLESSPICC VCHDPPEDPV VTLCGHIFCY 701: QCVSDYITGD EDTCPAPRCR EQLAHDVVFS KSTLRSCVAD DLGCSSSEDN SHDKSVFQNG EFSSSKIKAV LDILQSLSNQ GTSNSTQNGQ MASSSQQPND 801: DDDDDDDDVT IVEKTSLKST PSNGGPIKTI IFSQWTGMLD LVELSLIENS IEFRRLDGTM SLIARDRAVK EFSNDPDVKV MIMSLKAGNL GLNMIAACHV 901: ILLDLWWNPT TEDQAIDRAH RIGQTRPVTV TRITIKNTVE DRILALQEEK RKMVASAFGE DHGGSSATRL TVDDLKYLFM V |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)