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AT1G63490.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : transcription factor jumonji (jmjC) domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
transcription factor jumonji (jmjC) domain-containing protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), PLU-1-like (InterPro:IPR013637), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, C5HC2-type (InterPro:IPR004198), Transcription factor jumonji (InterPro:IPR013129), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (TAIR:AT1G08620.2); Has 2288 Blast hits to 1952 proteins in 202 species: Archae - 0; Bacteria - 15; Metazoa - 1333; Fungi - 459; Plants - 289; Viruses - 0; Other Eukaryotes - 192 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XR9JeggNOG:KOG1246EMBL:AY039958EMBL:BT011572
EMBL:CP002684EnsemblPlants:AT1G63490EnsemblPlants:AT1G63490.1entrez:842655
Gene3D:3.30.40.10GeneID:842655GO:GO:0003700GO:GO:0005634
GO:GO:0006355GO:GO:0008270GO:GO:0016706Gramene:AT1G63490.1
hmmpanther:PTHR10694hmmpanther:PTHR10694:SF8HOGENOM:HOG000084215InterPro:IPR001965
InterPro:IPR003347InterPro:IPR004198InterPro:IPR011011InterPro:IPR013083
InterPro:IPR013637InterPro:IPR019786KEGG:00260+1.14.11.-KEGG:00361+1.14.11.-
KEGG:00904+1.14.11.-KEGG:ath:AT1G63490KO:K11446ncoils:Coil
OMA:CESSCEPPfam:PF02373Pfam:PF02928Pfam:PF08429
Pfscan:PS51184PhylomeDB:Q94BQ7PROSITE:PS01359PROSITE:PS51184
Proteomes:UP000006548RefSeq:NP_564814.1scanprosite:PS01359SMART:SM00249
SMART:SM00558STRING:3702.AT1G63490.1SUPFAM:SSF51197SUPFAM:SSF57903
TAIR:AT1G63490UniGene:At.22811UniProt:Q94BQ7
Coordinates (TAIR10) chr1:-:23544938..23551946
Molecular Weight (calculated) 126538.00 Da
IEP (calculated) 6.13
GRAVY (calculated) -0.29
Length 1116 amino acids
Sequence (TAIR10)
(BLAST)
0001: MYGNDLDTSV YGSGFPRIGD QRPESVEADI WDEYCGSPWN LNNMPKLKGS MLQAIRHNIN GVTVPWLYLG MLFSSFCWHF EDHCFYSVNY LHWGEAKCWY
0101: GIPGSAASAF EKVMRKTLPD LFDAQPDLLF QLVTMLSPTV LQENKVPVYT VLQEPGNFVI TFPKSFHAGF NFGLNCAEAV NFATADWLPY GGSGAELYRL
0201: YRKPSVISHE ELLCVVAKGN CCNNEGSIHL KKELLRIYSK EKTWREQLWK SGILRSSPMF VPECADSVGI EEDPTCIICQ QFLHLSAIVC NCRPSVFACL
0301: EHWKHLCECE PTKLRLEYRY TLAELDMMVQ EVEKFGGCKT QETKISQRPS SGTKRSIALN KKQEGMQVSQ ARPADKWLLR ASKVLDAAFS SVEYATLLKE
0401: SEQFLWAGSE MDRVRDVTKS LNKAKIWAEA VSDCLSKVEG EVNDDSMKVH LEFIDELLRV NPVPCFNSGY LKLKDYAEEA RKLSEKIDSA LSSSPTITQL
0501: ELLHSEVSRS PISLKKHEIL SKKISSAKML AKRAKRYLTD AKPPGIEMDA LFKLNSEMLE LHVQLPETEG ILDLVKKSES ARDKSNKVLT GSLSLENVEE
0601: LLHEFDSFSI NVPELNILRQ YHVDTLSWIS RFNDVMVDVR EGKDQRKLIS DLSSLLRDGA SLGIQVEGLP LVEVELKKAS CREKARTVYT ARKSLDFIEQ
0701: LLSEAVILHI EEEEIFVEIS GILSTARCWE ERASTILENE TQMYELKDLV RMSVNIDAVL PTLQGIENTI SSAETWLQKS EPFLSATSSM ASSPCSMLEL
0801: PVLKDLVTQA KLLNVQLQEP RILETLLLNC ERWQCDNHQL LQETEDLLDN AKIDDGTHSN ILPKIMDLIT RVDSARRSGL ALGLNFDELP KLRTASLKLG
0901: WCCKTITLSS SSPTSELLED VGKPSLQHIQ QHLKEGQTLE ILPEEYYLGK RLMELKDTGL EWAKRARKVV TDSGALALED VFELISEGEN LPVHAEQELQ
1001: SLRARSMLHC ICLKPYNSRS MVSCSQCGEW YHTYCLKLHW RPKAYVCSAC CPLAETTPQI DPARATEPER PSLNQRRTRM VATDAAVNDL KWKTRKHIKR
1101: TTKRSPQVHI LPWFFT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)