AT1G63490.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : transcription factor jumonji (jmjC) domain-containing protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
transcription factor jumonji (jmjC) domain-containing protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), PLU-1-like (InterPro:IPR013637), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, C5HC2-type (InterPro:IPR004198), Transcription factor jumonji (InterPro:IPR013129), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (TAIR:AT1G08620.2); Has 2288 Blast hits to 1952 proteins in 202 species: Archae - 0; Bacteria - 15; Metazoa - 1333; Fungi - 459; Plants - 289; Viruses - 0; Other Eukaryotes - 192 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:23544938..23551946 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 126538.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.13 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.29 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1116 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MYGNDLDTSV YGSGFPRIGD QRPESVEADI WDEYCGSPWN LNNMPKLKGS MLQAIRHNIN GVTVPWLYLG MLFSSFCWHF EDHCFYSVNY LHWGEAKCWY 0101: GIPGSAASAF EKVMRKTLPD LFDAQPDLLF QLVTMLSPTV LQENKVPVYT VLQEPGNFVI TFPKSFHAGF NFGLNCAEAV NFATADWLPY GGSGAELYRL 0201: YRKPSVISHE ELLCVVAKGN CCNNEGSIHL KKELLRIYSK EKTWREQLWK SGILRSSPMF VPECADSVGI EEDPTCIICQ QFLHLSAIVC NCRPSVFACL 0301: EHWKHLCECE PTKLRLEYRY TLAELDMMVQ EVEKFGGCKT QETKISQRPS SGTKRSIALN KKQEGMQVSQ ARPADKWLLR ASKVLDAAFS SVEYATLLKE 0401: SEQFLWAGSE MDRVRDVTKS LNKAKIWAEA VSDCLSKVEG EVNDDSMKVH LEFIDELLRV NPVPCFNSGY LKLKDYAEEA RKLSEKIDSA LSSSPTITQL 0501: ELLHSEVSRS PISLKKHEIL SKKISSAKML AKRAKRYLTD AKPPGIEMDA LFKLNSEMLE LHVQLPETEG ILDLVKKSES ARDKSNKVLT GSLSLENVEE 0601: LLHEFDSFSI NVPELNILRQ YHVDTLSWIS RFNDVMVDVR EGKDQRKLIS DLSSLLRDGA SLGIQVEGLP LVEVELKKAS CREKARTVYT ARKSLDFIEQ 0701: LLSEAVILHI EEEEIFVEIS GILSTARCWE ERASTILENE TQMYELKDLV RMSVNIDAVL PTLQGIENTI SSAETWLQKS EPFLSATSSM ASSPCSMLEL 0801: PVLKDLVTQA KLLNVQLQEP RILETLLLNC ERWQCDNHQL LQETEDLLDN AKIDDGTHSN ILPKIMDLIT RVDSARRSGL ALGLNFDELP KLRTASLKLG 0901: WCCKTITLSS SSPTSELLED VGKPSLQHIQ QHLKEGQTLE ILPEEYYLGK RLMELKDTGL EWAKRARKVV TDSGALALED VFELISEGEN LPVHAEQELQ 1001: SLRARSMLHC ICLKPYNSRS MVSCSQCGEW YHTYCLKLHW RPKAYVCSAC CPLAETTPQI DPARATEPER PSLNQRRTRM VATDAAVNDL KWKTRKHIKR 1101: TTKRSPQVHI LPWFFT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)