AT5G42400.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : SET domain protein 25 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes ATXR7 (ARABIDOPSIS TRITHORAX-RELATED7), required for histone H3-K4 methylation and for transcriptional activation of Flowering Locus C. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
SET domain protein 25 (SDG25); CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214), GYF (InterPro:IPR003169); BEST Arabidopsis thaliana protein match is: homologue of trithorax (TAIR:AT2G31650.1); Has 5838 Blast hits to 5683 proteins in 501 species: Archae - 3; Bacteria - 461; Metazoa - 2434; Fungi - 507; Plants - 1016; Viruses - 2; Other Eukaryotes - 1415 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:16954469..16960671 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 158671.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.53 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.59 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1423 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MVAVDSTFPS HGSSYSSRRK KVSALEPNYF GSMCMGVYSD DVSISAREVA QDYSCDSCGD LATVSSACCN FDELCGLDSA LEMGCRSNED CRAGQEASGS 0101: GIASGLDKSV PGYTMYASGW MYGNQQGQMC GPYTQQQLYD GLSTNFLPED LLVYPIINGY TANSVPLKYF KQFPDHVATG FAYLQNGIIS VAPSVTSFPP 0201: SSSNATVHQD EIQTEHATSA THLISHQTMP PQTSSNGSVL DQLTLNHEES NMLASFLSLG NEHACWFLVD GEGRNHGPHS ILELFSWQQH GYVSDAALIR 0301: DGENKLRPIT LASLIGVWRV KCGDANCDEP VTGVNFISEV SEELSVHLQS GIMKIARRAL LDEIISSVIS DFLKAKKSDE HLKSYPPTSA VESISSRVIN 0401: AEKSVVSNTE SAGCKNTMNE GGHSSIAAES SKYTKSVGSI ENFQTSCSAV CRTLHHHCMQ IMWNAVFYDT VATHSSCWRK NKIWFRSSDI STVNYCKGSH 0501: TKYSDKPESF ESFTCRVDSS SSKTAYSDEF DLATNGARVR GLSSDTYGTE SVIASISEHV ENELFLSLKT HLTDYTSILI KDGANNTTSS ARDGKMHEGS 0601: FREQYNLEGS SKKKNGLNVV PAKLRFSNDF SDSQRLLQEG ESSEQITSED IIANIFSTAL ETSDIPVNDE LDALAIHEPP PPGCESNINM PCLRYKYQPV 0701: RSKESIPEIK AYVSMALCRQ KLHNDVMRDW KSLFLKCYLN EFLASLKGSH QVSRKETLAL KKRKTVTRNK KLVQSNISNQ TAEKLRKPCV GASEKVLVKR 0801: SKKLSDSHSM KEVLKVDTPS IDLSVRKPSQ QKMRNTDRRD HCIIKDATKL HKEKVGKDAF SKVICDKSQD LEMEDEFDDA LLITRLRRIS RNKTKELREC 0901: RNAAKSCEEI SVTAEESEET VDCKDHEESL SNKPSQKVKK AHTSKLKRKN LSDARDEGTK SCNGAVKSFT EISGKEGDTE SLGLAISDKV SHQNLSKRRK 1001: SKIALFLFPG FENTSRKCFT KLLSPEDAAK NGQDMSNPTG NPPRLAEGKK FVEKSACSIS QKGRKSSQSS ILKRKHQLDE KISNVPSRRR LSLSSTDSED 1101: AVIKEDYDVR NEEKLPCHTS DKLQKGPNKL IRRRKPLAKH TTERSPIKDL SVDDGRPKPI ALKPLEKLSS KPSKKKLFLS IPKSDGCART SINGWHWHAW 1201: SLKASAEERA RVRGSSCVHM QHFGSKSSLT QNVLSARTNR AKLRNLLAAA DGADVLKMSQ LKARKKHLRF QQSKIHDWGL VALEPIEAED FVIEYVGELI 1301: RSSISEIRER QYEKMGIGSS YLFRLDDGYV LDATKRGGIA RFINHSCEPN CYTKIISVEG KKKIFIYAKR HIDAGEEISY NYKFPLEDDK IPCNCGAPNV 1401: YCFCEQVPWI AKLKRRTWFS RRN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)