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AT2G47410.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : WD40/YVTN repeat-like-containing domain;Bromodomain
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
WD40/YVTN repeat-like-containing domain;Bromodomain; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), Bromodomain (InterPro:IPR001487), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: WD40/YVTN repeat-like-containing domain;Bromodomain (TAIR:AT5G49430.1); Has 67123 Blast hits to 29366 proteins in 847 species: Archae - 50; Bacteria - 8348; Metazoa - 26818; Fungi - 14890; Plants - 8157; Viruses - 8; Other Eukaryotes - 8852 (source: NCBI BLink).
Protein Annotations
eggNOG:COG2319eggNOG:ENOG410IRXREMBL:CP002685EnsemblPlants:AT2G47410
EnsemblPlants:AT2G47410.1entrez:819354ExpressionAtlas:F4IL43Gene3D:1.20.920.10
Gene3D:2.130.10.10GeneID:819354GO:GO:0080008Gramene:AT2G47410.1
hmmpanther:PTHR16266InParanoid:F4IL43InterPro:IPR001487InterPro:IPR001680
InterPro:IPR015943InterPro:IPR017986InterPro:IPR019775ncoils:Coil
OMA:RIWDARFPaxDb:F4IL43Pfam:PF00400Pfam:PF00439
Pfscan:PS50082Pfscan:PS50294PRIDE:F4IL43PROSITE:PS00678
PROSITE:PS50082PROSITE:PS50294ProteinModelPortal:F4IL43Proteomes:UP000006548
RefSeq:NP_850474.3scanprosite:PS00678SMART:SM00297SMART:SM00320
STRING:3702.AT2G47410.1SUPFAM:SSF47370SUPFAM:SSF50978TAIR:AT2G47410
UniGene:At.36365UniProt:F4IL43
Coordinates (TAIR10) chr2:+:19449133..19456991
Molecular Weight (calculated) 171546.00 Da
IEP (calculated) 7.07
GRAVY (calculated) -0.62
Length 1520 amino acids
Sequence (TAIR10)
(BLAST)
0001: MDWIHKSTPF MEPSNLAKLV QGNVPLQPHD SHSSLTDLDM DLREVYFLIL HFLSIGPCER TFGHLRDEIL EKGLLPRRYH SWWSRSGIYS GRADDDGISL
0101: PLSYDNLIER YPHIEKDHLV KLLKQLILNP SFPSHMRVEG NAPNAADVPT LLGSGTFSLV DRSNNIESQK ARHVASYLRW PHMHADQVRG LSLREIGGGF
0201: RKHHRAPSIL SACHAIAKPS TMVQKMQNIK KLRGHRNAVY CAIFDRSGRY VITGSDDRLV KIWSMETALC LASCRGHEGD ITDLAVSSNN ALVASASNDF
0301: VIRVWRLPDG MPISVLRGHT GAVTAIAFSP RQASVYQLLS SSDDGTCRIW DARYSQWLPR IYVPSPSDAN TGSTSNASQS HQILCCAYNA NGTIFVTGSS
0401: DSNARVWSAS KPNLDDAEQP THELDVLRGH ENDVNYVQFS GCAVAPKSST ADALKEDSYP KFKNSWFCHD NIVTCSRDGS AIIWTPRSRK FHGKSGRWMK
0501: GYHLKVPPPP LPPQPPRGGP RQRFLPTPRG VNMIIWSLDN RFVLAAIMDC RICVWNAADG SLVHCLTGHS ESSYVLDVHP FNPRIAMSAG YDGKTIIWDI
0601: WEGIPIKVYE IGRFKLVDGK FSQDGTSIVL SDDVGQIYFL NTGQGESQKN AKYDQFFLGD YRPLIRDTNG HVLDQETQLL PHRRNLQDLL CDSSMIPYPE
0701: PDQTMFQQRR LGALGVEWRP SSIKFSVGPD FSLGQDYIMP PLADLDRLIE PLPEFIDAMY WEPEHEVLSD DNDSEYNAEV SSDGARASPC SNSSNELECS
0801: SEDSDVENIH ESSYHWKRRR KHPKVNVSTS SGRRDKRILD ENDSSNSGIK RTKNRRIVVK ASKRKHSDVK ASRPQRAAAQ NARSLLSKIS GSSSDEVDDD
0901: NDSSNSESDR SIPTLRQLDK PSQMLESLSN DKQKKRLIVK ISVKKPAESM GSKGDVINQA DLEQLSSKPL EENHRVIGIY SREPGSSSVD AKGDSGCQSI
1001: PYSMNTPQRE KADNQLIRSS DQDQNMCKWR EEIPVCEPTE LTAPENIEEA QPFYGDEADE ILPKKVRRLR LKLRHPNSPR KLEPDEVADD LADGGDGFAS
1101: IAPSFMNPIM DSEPVIDSVR DSSAHNFEFG EATADVIRRK RSIRSESSTR NSALRIRLGS GSVDKIKKQG IPSTSVYDDA SLEEWPSTSK AGSRSRSASV
1201: SKPSLHTGIR LNSVSGKISW LLLSEHEEGC RYIPQLGDEV IYFKQGHQEF LKTKELNDRD RSRYLPRNLG AVEICKVEKL NYDTYPGSGD SCCKMTLRVL
1301: DSSSSHASRK EFQLTLPELI NFPDFIVEKT RYDAAIQTNW KIGNECRVWW RDATGEGGAW WEGRIESSQV KSTDFPESPW ERYRVVYETG ETSLHSPWEF
1401: DNPEFPWEKS TIEDERREKL LSLFAGLVKS ISKHQDSYGI QKLNEAAQKM DFCNRFPVPL YPELIHERLE NQYYRSIESF KHDVDAMLSN AELYFVRSAH
1501: MLSKIKRLRD KLTKTLRKLI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)