AT5G04240.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Early Flowering 6 (ELF6) encodes a Jumonji N/C and zinc finger domain-containing protein that acts as a repressor in the photoperiod pathway. ELF6 interacts with BES1 in a Y2H assay, in vitro, and in Arabidosis protoplasts (based on BiFC). ELF6 may play a role in brassinosteroid signaling by affecting histone methylation in the promoters of BR-responsive genes. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
EARLY FLOWERING 6 (ELF6); CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), Zinc finger, C2H2-like (InterPro:IPR015880), Transcription factor jumonji (InterPro:IPR013129), Zinc finger, C2H2-type (InterPro:IPR007087), Transcription factor jumonji, JmjN (InterPro:IPR003349), Zinc finger, C2H2-type/integrase, DNA-binding (InterPro:IPR013087); BEST Arabidopsis thaliana protein match is: relative of early flowering 6 (TAIR:AT3G48430.1); Has 112631 Blast hits to 36360 proteins in 1127 species: Archae - 0; Bacteria - 99; Metazoa - 105700; Fungi - 2573; Plants - 699; Viruses - 11; Other Eukaryotes - 3549 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:1169544..1174638 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 150080.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.89 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.59 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1340 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MGNVEIPNWL KALPLAPVFR PTDTEFADPI AYISKIEKEA SAFGICKIIP PLPKPSKKYV FYNLNKSLLK CPELVSDVDI SKVCKEDRAV FTTRQQELGQ 0101: TVKKNKGEKG KSNSQRSGVK QVWQSGGVYT LDQFEAKSKA FYKTQLGTVK ELAPVVIEAL FWKAALEKPI YIEYANDVPG SAFGEPEDHF RHFRQRKRRG 0201: RGFYQRKTEN NDPSGKNGEK SSPEVEKAPL ASTSLSSQDS SKQKNMDIVD EMEGTAGWKL SNSSWNLQMI ARSPGSVTRF MPDDIPGVTS PMVYIGMLFS 0301: WFAWHVEDHE LHSMNYLHTG SPKTWYAVPC DYALDFEEVI RKNSYGRNID QLAALTQLGE KTTLVSPEMI VASGIPCCRL VQNPGEFVVT FPRSYHVGFS 0401: HGFNCGEAAN FGTPQWLNVA KEAAVRRAAM NYLPMLSHQQ LLYLLTMSFV SRVPRSLLPG GRSSRLRDRQ REEREFLVKR AFVEDILNEN KNLSVLLREP 0501: GSRLVMWDPD LLPRHSALAL AAAGVAGASA VSPPAVAKKE LEEGHSELQN KEKTSLLEEL SLFMEKLNDV YYDDDDGLLN DFQVDTGTLP CVACGVLGFP 0601: FMSVVQPSEK ALKDLSERQG ETDAQEIMTL SSEKSDCEWK TSSRYIRPRI FCLEHTIELQ RLLQSRGGLK FLVICHKDFQ KFKAHAAIVA EEVKVPFSYD 0701: DVLLESASQE ELSLIDLAIE DEEKYEHSVD WTSELGINLR YCVKVRKNSP TKKIQHALSL GGLFSDTSQM LDFTTIRWLQ RKSRSKAKPS STSSFTPCEH 0801: LEVKADGKLR DNLDSQTGKK EEKIIQYSRK KKLNPKPSAE QVQELATLAK SKDFDKTCKN FSSRSHLDSA IRSEMNSEIG DSGRVIGVSF SINPCSSSFT 0901: VGHGQEHPEI TVKFGSDLDG NVTNSLSMVN GDSADLTLTS ISREQHQGHS MTSNNNGSNS GSHVVASQTI LVSTGDNHDG PRKLSGDYVC SDVSVRGIQE 1001: AVEMSDQEFG EPRSTVTNIE DEQQSQIVKP TQREAVFGDH EQVEGAEAVS TRENLCSEII LHTEHSSAHV GMEIPDINTA SENLVVDMTH DGEPLESSDI 1101: LSSSNGDEAS SNGLQVLNDE LSMESEVSSS ENTEVIEAPN SMGEAKKKRK IESESETNDN PESSIGFIRS PCEGLRSRGK RKATCETSLK HTETSDEEKK 1201: PIAKRLKKTP KACSGSRQQE VPTTTHPNRC YLEGCKMTFE SKAKLQTHKR NRCTHEGCGK KFRAHKYLVL HQRVHKDERP FECSWKGCSM TFKWQWARTE 1301: HLRLHTGERP YICKVDGCGL SFRFVSDYSR HRRKTMHYVT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)