AT2G46020.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : transcription regulatory protein SNF2, putative | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a SWI/SNF chromatin remodeling ATPase that upregulates transcription of all three CUC genes and is involved in the formation and/or maintenance of boundary cells during embryogenesis. Also mediates repression of expression of seed storage proteins in vegetative tissues. Interacts strongly with AtSWI3C, also with AtSWI3B, but not with AtSWI3A or AtSWI3D. | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
BRAHMA (BRM); FUNCTIONS IN: helicase activity, transcription regulator activity, DNA binding, ATP binding; INVOLVED IN: ATP-dependent chromatin remodeling, organ boundary specification between lateral organs and the meristem, regulation of gene expression, epigenetic; LOCATED IN: cytosol, nucleus, chromatin remodeling complex; EXPRESSED IN: 31 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine-Leucine-Glutamine, QLQ (InterPro:IPR014978), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), Bromodomain (InterPro:IPR001487), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G28290.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:18923304..18931769 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 245453.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.30 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.81 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 2192 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MQSGGSGGGP ARNPAMGPAG RTASTSSAAS PSSSSSSVQQ QQQQQQQQQQ QQQLASRQQQ QQHRNSDTNE NMFAYQPGGV QGMMGGGNFA SSPGSMQMPQ 0101: QSRNFFESPQ QQQQQQQQGS STQEGQQNFN PMQQAYIQFA MQAQHQKAQQ QARMGMVGSS SVGKDQDARM GMLNMQDLNP SSQPQASSSK PSGDQFARGE 0201: RQTESSSQQR NETKSHPQQQ VGTGQLMPGN MIRPMQAPQA QQLVNNMGNN QLAFAQQWQA MQAWARERNI DLSHPANASQ MAHILQARMA AQQKAGEGNV 0301: ASQSPSIPIS SQPASSSVVP GENSPHANSA SDISGQSGSA KARHALSTGS FASTSSPRMV NPAMNPFSGQ GRENPMYPRH LVQPTNGMPS GNPLQTSANE 0401: TPVLDQNAST KKSLGPAEHL QMQQPRQLNT PTPNLVAPSD TGPLSNSSLQ SGQGTQQAQQ RSGFTKQQLH VLKAQILAFR RLKKGEGSLP PELLQAISPP 0501: PLELQTQRQI SPAIGKVQDR SSDKTGEDQA RSLECGKESQ AAASSNGPIF SKEEDNVGDT EVALTTGHSQ LFQNLGKEAT STDVATKEEQ QTDVFPVKSD 0601: QGADSSTQKN PRSDSTADKG KAVASDGSQS KVPPQANSPQ PPKDTASARK YYGPLFDFPF FTRKLDSYGS ATANANNNLT LAYDIKDLIC EEGAEFLSKK 0701: RTDSLKKING LLAKNLERKR IRPDLVLRLQ IEEKKLRLSD LQSRVREEVD RQQQEIMSMP DRPYRKFVRL CERQRLEMNR QVLANQKAVR EKQLKTIFQW 0801: RKKLLEAHWA IRDARTARNR GVAKYHEKML REFSKRKDDG RNKRMEALKN NDVERYREML LEQQTNMPGD AAERYAVLSS FLTQTEDYLH KLGGKITATK 0901: NQQEVEEAAN AAAVAARLQG LSEEEVRAAA TCAREEVVIR NRFTEMNAPK ENSSVNKYYT LAHAVNEVVV RQPSMLQAGT LRDYQLVGLQ WMLSLYNNKL 1001: NGILADEMGL GKTVQVMALI AYLMEFKGNY GPHLIIVPNA VLVNWKSELH TWLPSVSCIY YVGTKDQRSK LFSQVKFEKF NVLVTTYEFI MYDRSKLSKV 1101: DWKYIIIDEA QRMKDRESVL ARDLDRYRCQ RRLLLTGTPL QNDLKELWSL LNLLLPDVFD NRKAFHDWFA QPFQKEGPAH NIEDDWLETE KKVIVIHRLH 1201: QILEPFMLRR RVEDVEGSLP AKVSVVLRCR MSAIQSAVYD WIKATGTLRV DPDDEKLRAQ KNPIYQAKIY RTLNNRCMEL RKACNHPLLN YPYFNDFSKD 1301: FLVRSCGKLW ILDRILIKLQ RTGHRVLLFS TMTKLLDILE EYLQWRRLVY RRIDGTTSLE DRESAIVDFN DPDTDCFIFL LSIRAAGRGL NLQTADTVVI 1401: YDPDPNPKNE EQAVARAHRI GQTREVKVIY MEAVVEKLSS HQKEDELRSG GSVDLEDDMA GKDRYIGSIE GLIRNNIQQY KIDMADEVIN AGRFDQRTTH 1501: EERRMTLETL LHDEERYQET VHDVPSLHEV NRMIARSEEE VELFDQMDEE FDWTEEMTNH EQVPKWLRAS TREVNATVAD LSKKPSKNML SSSNLIVQPG 1601: GPGGERKRGR PKSKKINYKE IEDDIAGYSE ESSEERNIDS GNEEEGDIRQ FDDDELTGAL GDHQTNKGEF DGENPVCGYD YPPGSGSYKK NPPRDDAGSS 1701: GSSPESHRSK EMASPVSSQK FGSLSALDTR PGSVSKRLLD DLEEGEIAAS GDSHIDLQRS GSWAHDRDEG DEEQVLQPTI KRKRSIRLRP RQTAERVDGS 1801: EMPAAQPLQV DRSYRSKLRT VVDSHSSRQD QSDSSSRLRS VPAKKVASTS KLHVSSPKSG RLNATQLTVE DNAEASRETW DGTSPISSSN AGARMSHIIQ 1901: KRCKIVISKL QRRIDKEGQQ IVPMLTNLWK RIQNGYAAGG VNNLLELREI DHRVERLEYA GVMELASDVQ LMLRGAMQFY GFSHEVRSEA KKVHNLFFDL 2001: LKMSFPDTDF REARNALSFS GSAPTLVSTP TPRGAGISQG KRQKLVNEPE TEPSSPQRSQ QRENSRIRVQ IPQKETKLGG TTSHTDESPI LAHPGELVIC 2101: KKKRKDREKS GPKTRTGGSS SPVSPPPAMI GRGLRSPVSG GVPRETRLAQ QQRWPNQPTH PNNSGAAGDS VGWANPVKRL RTDSGKRRPS HL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)