AT2G06210.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : binding | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a yeast CTR9 homolog that is involved in the control of flowering time by elevating FLC expression to a level that creates the vernalization-responsive, winter-annual habit. Yeast CTR9 is a component of a five-member PAF1 complex that associates with RNA pol II and is thought to regulate gene expression by recruiting SET1 (a histone 3 Lys 4 [H3-K4] methyl transferase) to the initially transcribed [5'] regions of target chromatin. Mutants display reduced H3-K4 methylation in both FLC and FLM chromatin. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
EARLY FLOWERING 8 (ELF8); FUNCTIONS IN: binding; INVOLVED IN: positive regulation of transcription, DNA-dependent, histone methylation, negative regulation of flower development; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide TPR2 (InterPro:IPR013105), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G04240.1); Has 39956 Blast hits to 25035 proteins in 1980 species: Archae - 1189; Bacteria - 13149; Metazoa - 9789; Fungi - 2497; Plants - 1315; Viruses - 192; Other Eukaryotes - 11825 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:2429108..2436588 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 124095.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.98 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.65 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1091 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MASVYIPVQN SEEEVRVVLD QLPRDASDIL DILKAEQAPL DLWLIIAREY FKQGKIEQFR QILEEGSSSD IDEYYADVKY ERIAILNALG AYYSYLGKTE 0101: TKNREKEEQF ISATRYYNKA SRIDMHEPST WVGKGQLLLA KGEIDNALQA FKIVLDTAPD NVPALLGQAS VEFNRGRFSE SLQLYKRALQ VFPGCPAAVR 0201: LGIGLCRYKL GQLDKARQAF DRVLQLDPDN VEALVALGIM DLQANDSIGM RKGMDRMQQA FEIYPYCASA LNYLANHFFF TGQHFLVEQL TETALAVTTH 0301: GPTKSHSFYN LARSYHSKGD FEKAGMYYMA AIKETNNNPH EFVFPYFGLG QVQLKLGELK GSVFNFEKVL EVYPDNCETL KALGHLYTQL GQNEKALEYM 0401: RKATKLDPRD AQAFVGLGEL LISSDTGAAL DAFKMARTLM KKGGQEVPIE VLNDIGALHF EREEFESALE NFKEALGDGI WISFLDEKEN LEQTGVSVLG 0501: YKDTGIFHRL IESGHSVDVP WNKVTTLFNL ARLLEQIHKT EAATFMYRLI LFKYPGYIDA YLRLAASAKA QNNLPLAIEL VNEALKVDDK NPNALSLLGE 0601: LELKNDDWVK AKETFRAAND ATDGKDSYAI LSLGNWNYFA AMRNEKRNPK LEATHLEKAK ELYTKVLTQH NSNMYAANGS GIVLAEKGQF DIAKDVFTQV 0701: QEAASGSVFL QMPDVWVNLA HVYFAQGNFA LTVKMYQNCL RKFFYNTDSQ ILLYLARTHY EAEQWQECKK TLLRAIHLTP SNYTFRFDLG AVMQKSSSST 0801: LQKKKRTADE VRSTVAEAEN AVRVFTQLSA ASDLHVHGFD SKKIQTHVQY CSHLLEAAKV HREAAEQEEL QNRQRLEVAR QAALAEEARR KAEEQRKYQL 0901: EKRKQEEELR RLKQEEEKFQ RIKEQWKSST PGSNKRKDRV EDDDGESKPS ERRRKKGGKR RKKDKSSRAR HYEDDEEEAA TMDDHNEVED EDANTNYNRE 1001: DEMTTQEAEE PVDDDAHDLL AAAGLEDPDV DDDEVPTSGV RRRRALSSSD EEGELMEESH PNSSPQKEKE ESNGEAGDPN MEEEEEEEEA N |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)