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AT2G06210.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22550958 (2012): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : binding
Curator
Summary (TAIR10)
Encodes a yeast CTR9 homolog that is involved in the control of flowering time by elevating FLC expression to a level that creates the vernalization-responsive, winter-annual habit. Yeast CTR9 is a component of a five-member PAF1 complex that associates with RNA pol II and is thought to regulate gene expression by recruiting SET1 (a histone 3 Lys 4 [H3-K4] methyl transferase) to the initially transcribed [5'] regions of target chromatin. Mutants display reduced H3-K4 methylation in both FLC and FLM chromatin.
Computational
Description (TAIR10)
EARLY FLOWERING 8 (ELF8); FUNCTIONS IN: binding; INVOLVED IN: positive regulation of transcription, DNA-dependent, histone methylation, negative regulation of flower development; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide TPR2 (InterPro:IPR013105), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G04240.1); Has 39956 Blast hits to 25035 proteins in 1980 species: Archae - 1189; Bacteria - 13149; Metazoa - 9789; Fungi - 2497; Plants - 1315; Viruses - 192; Other Eukaryotes - 11825 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0457eggNOG:KOG2002EMBL:AC006413EMBL:AY070455
EMBL:BR000721EMBL:CP002685EnsemblPlants:AT2G06210EnsemblPlants:AT2G06210.1
entrez:815177Gene3D:1.25.40.10GeneID:815177Genevisible:B5X0I6
GO:GO:0000993GO:GO:0005634GO:GO:0006351GO:GO:0009908
GO:GO:0009910GO:GO:0016020GO:GO:0016571GO:GO:0016593
GO:GO:0045893GO:GO:0051569Gramene:AT2G06210.1hmmpanther:PTHR14027
hmmpanther:PTHR14027:SF2IntAct:B5X0I6InterPro:IPR011990InterPro:IPR013026
InterPro:IPR019734InterPro:IPR031101iPTMnet:B5X0I6KEGG:ath:AT2G06210
KO:K15176ncoils:CoilOMA:PSTQNDTPANTHER:PTHR14027:SF2
PaxDb:B5X0I6Pfam:B5X0I6Pfam:PF00515Pfam:PF07719
Pfam:PF13181Pfam:PF13414Pfscan:PS50005Pfscan:PS50293
PhylomeDB:B5X0I6PIR:B84476PRO:PR:B5X0I6PROSITE:PS50005
PROSITE:PS50293ProteinModelPortal:B5X0I6Proteomes:UP000006548RefSeq:NP_178674.6
SMART:SM00028STRING:3702.AT2G06210.1SUPFAM:SSF48452TAIR:AT2G06210
tair10-symbols:ELF8tair10-symbols:VIP6UniGene:At.28775UniProt:B5X0I6
Coordinates (TAIR10) chr2:-:2429108..2436588
Molecular Weight (calculated) 124095.00 Da
IEP (calculated) 4.98
GRAVY (calculated) -0.65
Length 1091 amino acids
Sequence (TAIR10)
(BLAST)
0001: MASVYIPVQN SEEEVRVVLD QLPRDASDIL DILKAEQAPL DLWLIIAREY FKQGKIEQFR QILEEGSSSD IDEYYADVKY ERIAILNALG AYYSYLGKTE
0101: TKNREKEEQF ISATRYYNKA SRIDMHEPST WVGKGQLLLA KGEIDNALQA FKIVLDTAPD NVPALLGQAS VEFNRGRFSE SLQLYKRALQ VFPGCPAAVR
0201: LGIGLCRYKL GQLDKARQAF DRVLQLDPDN VEALVALGIM DLQANDSIGM RKGMDRMQQA FEIYPYCASA LNYLANHFFF TGQHFLVEQL TETALAVTTH
0301: GPTKSHSFYN LARSYHSKGD FEKAGMYYMA AIKETNNNPH EFVFPYFGLG QVQLKLGELK GSVFNFEKVL EVYPDNCETL KALGHLYTQL GQNEKALEYM
0401: RKATKLDPRD AQAFVGLGEL LISSDTGAAL DAFKMARTLM KKGGQEVPIE VLNDIGALHF EREEFESALE NFKEALGDGI WISFLDEKEN LEQTGVSVLG
0501: YKDTGIFHRL IESGHSVDVP WNKVTTLFNL ARLLEQIHKT EAATFMYRLI LFKYPGYIDA YLRLAASAKA QNNLPLAIEL VNEALKVDDK NPNALSLLGE
0601: LELKNDDWVK AKETFRAAND ATDGKDSYAI LSLGNWNYFA AMRNEKRNPK LEATHLEKAK ELYTKVLTQH NSNMYAANGS GIVLAEKGQF DIAKDVFTQV
0701: QEAASGSVFL QMPDVWVNLA HVYFAQGNFA LTVKMYQNCL RKFFYNTDSQ ILLYLARTHY EAEQWQECKK TLLRAIHLTP SNYTFRFDLG AVMQKSSSST
0801: LQKKKRTADE VRSTVAEAEN AVRVFTQLSA ASDLHVHGFD SKKIQTHVQY CSHLLEAAKV HREAAEQEEL QNRQRLEVAR QAALAEEARR KAEEQRKYQL
0901: EKRKQEEELR RLKQEEEKFQ RIKEQWKSST PGSNKRKDRV EDDDGESKPS ERRRKKGGKR RKKDKSSRAR HYEDDEEEAA TMDDHNEVED EDANTNYNRE
1001: DEMTTQEAEE PVDDDAHDLL AAAGLEDPDV DDDEVPTSGV RRRRALSSSD EEGELMEESH PNSSPQKEKE ESNGEAGDPN MEEEEEEEEA N
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)