AT4G32070.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (TAIR:AT2G25290.3); Has 6060 Blast hits to 4914 proteins in 361 species: Archae - 26; Bacteria - 288; Metazoa - 2537; Fungi - 747; Plants - 1305; Viruses - 3; Other Eukaryotes - 1154 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:15504662..15507097 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 91259.40 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.61 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.59 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 811 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGKPTAKKKN PETPKDASGG GGGGGGKSGK TYHRSTSRVF DEDMEIFISR ALELKEEGNK LFQKRDHEGA MLSFDKALKL LPKDHIDVAY LRTSMASCYM 101: QMGLGEYPNA ISECNLALEA SPRYSKALVR RSRCYEALNK LDYAFRDARI VLNMEPGNVS ANEIFDRVKK VLVDKGIDVD EMEKDFVDVQ PVCAARLKKI 201: VKERLRKSKK KKKSGGKDEE LKSPKVVVVD KGDEAEGRNK PKEEKSDKSD IDGKIGGKRE EKKTSFKSDK GQKKKSGGNK AGEERKVEDK VVVMDKEVIA 301: SEIVDGGGSK KEGATVTRTI KLVHGDDIRW AQLPLDSTVR LVRDVIRDRF PALRGFLIKY RDTEGDLVTI TTTDELRLAA STHDKLGSLR LYIAEVNPDQ 401: EPTYDGMSNT ESTDKVSKRL SSLADNGSVG EYVGSDKASG CFENWIFQFA QLFKNHVGFD SDSYVDLHDL GMKLYTEAME DAVTGEDAQE LFQIAADKFQ 501: EMGALALLNW GNVHMSKARK QVCIPEDASR EAIIEAVEAA FVWTQNEYNK AAEKYEEAIK VKPDFYEALL ALGQEQFEHA KLCWYHALKS KVDLESEASQ 601: EVLKLYNKAE DSMERGMQIW EEMEECRLNG ISKLDKHKNM LRKLELDELF SEASEEETVE QTANMSSQIN LLWGSLLYER SIVEYKLGLP TWDECLEVAV 701: EKFELAGASA TDIAVMVKNH CSSESALEGN QFLARIPNSG QVTTQWFSVY NNLRTNAGMG FKIDEIVQAW NEMYDAKRWQ MGVPSFRLEP MFRRRAPKLH 801: DILENVFSGP V |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)