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AT1G67230.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23396599 (2013): nucleus nuclear envelope
  • PMID:23396599 (2013): nucleus nuclear matrix chromatin
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:30961429 (2019): nucleus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22550958 (2012): plastid
  • PMID:21433285 (2011): plasma membrane
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : little nuclei1
Curator
Summary (TAIR10)
Encodes a nuclear coiled-coil protein related to the carrot peripheral nuclear protein NMCP1 that is involved in the determination of plant nuclear structure.
Computational
Description (TAIR10)
LITTLE NUCLEI1 (LINC1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: nucleus organization; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: nuclear matrix constituent protein-related (TAIR:AT1G13220.2); Has 314297 Blast hits to 138342 proteins in 3965 species: Archae - 3454; Bacteria - 70538; Metazoa - 123746; Fungi - 25476; Plants - 17143; Viruses - 1173; Other Eukaryotes - 72767 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IJ15eggNOG:ENOG4111KVIEMBL:AC002130EMBL:AK117144
EMBL:AK230454EMBL:CP002684EnsemblPlants:AT1G67230EnsemblPlants:AT1G67230.1
entrez:843043GeneID:843043Genevisible:F4HRT5GO:GO:0000789
GO:GO:0005634GO:GO:0005635GO:GO:0005652GO:GO:0005654
GO:GO:0005829GO:GO:0006997GO:GO:0031965GO:GO:0034399
GO:GO:0097298Gramene:AT1G67230.1hmmpanther:PTHR31908hmmpanther:PTHR31908:SF3
HOGENOM:HOG000239398InParanoid:F4HRT5iPTMnet:F4HRT5KEGG:ath:AT1G67230
ncoils:CoilOMA:NFEREWEPaxDb:F4HRT5Pfam:F4HRT5
PRIDE:F4HRT5PRO:PR:F4HRT5ProteinModelPortal:F4HRT5Proteomes:UP000006548
RefSeq:NP_176892.1STRING:3702.AT1G67230.1TAIR:AT1G67230tair10-symbols:LINC1
UniGene:At.43084UniProt:F4HRT5
Coordinates (TAIR10) chr1:-:25151561..25156032
Molecular Weight (calculated) 129100.00 Da
IEP (calculated) 4.96
GRAVY (calculated) -1.05
Length 1132 amino acids
Sequence (TAIR10)
(BLAST)
0001: MSTPLKVWQR WSTPTKATNP DSNGSSHGTG LDMVTPVSGR VSEIQFDDPR ILPEKISELE KELFEYQHSM GLLLIEKKEW SSQYEALQQA FEEVNECLKQ
0101: ERNAHLIAIA DVEKREEGLR KALGIEKQCA LDLEKALKEL RAENAEIKFT ADSKLTEANA LVRSVEEKSL EVEAKLRAVD AKLAEVSRKS SDVERKAKEV
0201: EARESSLQRE RFSYIAEREA DEATLSKQRE DLREWERKLQ EGEERVAKSQ MIVKQREDRA NESDKIIKQK GKELEEAQKK IDAANLAVKK LEDDVSSRIK
0301: DLALREQETD VLKKSIETKA RELQALQEKL EAREKMAVQQ LVDEHQAKLD STQREFELEM EQKRKSIDDS LKSKVAEVEK REAEWKHMEE KVAKREQALD
0401: RKLEKHKEKE NDFDLRLKGI SGREKALKSE EKALETEKKK LLEDKEIILN LKALVEKVSG ENQAQLSEIN KEKDELRVTE EERSEYLRLQ TELKEQIEKC
0501: RSQQELLQKE AEDLKAQRES FEKEWEELDE RKAKIGNELK NITDQKEKLE RHIHLEEERL KKEKQAANEN MERELETLEV AKASFAETME YERSMLSKKA
0601: ESERSQLLHD IEMRKRKLES DMQTILEEKE RELQAKKKLF EEEREKELSN INYLRDVARR EMMDMQNERQ RIEKEKLEVD SSKNHLEEQQ TEIRKDVDDL
0701: VALTKKLKEQ REQFISERSR FLSSMESNRN CSRCGELLSE LVLPEIDNLE MPNMSKLANI LDNEAPRQEM RDISPTAAGL GLPVTGGKVS WFRKCTSKML
0801: KLSPIKMTEP SVTWNLADQE PQSTEQANVG GPSTTVQAAT TYSFDVQKAE SETGTKEVEV TNVNSDGDQS DINSKAQEVA ADSLSNLDVD GQSRMKGKGK
0901: ARTRRTRSVK DVVDDAKALY GESINLYEPN DSTENVDDST KASTGETGRS DKAISKNGRK RGRVGSLRTC TTEQDGNESD GKSDSVTGGA HQRKRRQKVA
1001: SEQQGEVVGQ RYNLRRPRRV TGEPALSKKN EDIGGVQQEE GIHCTQATAT ASVGVAVSDN GVSTNVVQHE ATADSEDTDA GSPKRTDESE AMSEDVNKTP
1101: LRADSDGEDD ESDAEHPGKV SIGKKLWTFL TT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)