AT4G31880.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
LOCATED IN: cytosol, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: Tudor/PWWP/MBT superfamily protein (TAIR:AT1G15940.1); Has 137162 Blast hits to 70781 proteins in 2973 species: Archae - 289; Bacteria - 24182; Metazoa - 56725; Fungi - 20130; Plants - 6559; Viruses - 758; Other Eukaryotes - 28519 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:15419435..15423939 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 94213.80 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.32 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.98 | ||||||||||||||||||||||||||||||||
| Length | 873 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSDSDKELEN QIIEAGEKLI DPPSSLDELL SFLDKLFVSL AEVEQSPPDS MQNALTPLMK GLVGGKLFKH SDVDVKVAVA ACISEITRIT APDAPYDDDQ 101: MKEVFKLIVS SFEDLVDKSS RSYAKRISIL ETVAKVRSCV VMLDLECDAL LIEMFQHFLK AIRDHHSGNV FSSMENIMTL VLEESEDIPS EMLSPILHSV 201: KKDDEISQVS RRLAEQVLSN CASKLKTYLT EAVKSSGVPL DKYSNIVASI CEGTFSALQQ DQVVANEKED SQGHIKRETE VEKAAEISTP ERTDAPKDES 301: GKSGVSNGVA QQNDSSVDTD SMKKQDDTGA KDEPQQLDNP RNTDLNNTTE EKPDVEHQIE EKENESSSVK QADLSKDSDI KEETEPAELL DSKDVLTSPP 401: VDSSVTAATS SENEKNKSVQ ILPSKTSGDE TANVSSPSMA EELPEQSVPK KTANQKKKES STEEVKPSAS IATEEVSEEP NTSEPQVTKK SGKKVASSSK 501: TKPTVPPSKK STSETKVAKQ SEKKVVGSDN AQESTKPKEE KKKPGRGKAI DEESLHTSSG DNEKPAVSSG KLASKSKKEA KQTVEESPNS NTKRKRSLGQ 601: GKASGESLVG SRIKVWWPMD QAYYKGVVES YDAAKKKHLV IYDDGDQEIL YLKNQKWSPL DESELSQDEE AADQTGQEED ASTVPLTKKA KTGKQSKMDN 701: SSAKKGSGAG SSKAKATPAS KSSKTSQDDK TASKSKDSKE ASREEEASSE EESEEEEPPK TVGKSGSSRS KKDISSVSKS GKSKASSKKK EEPSKATTSS 801: KSKSGPVKSV PAKSKTGKGK AKSGSASTPA SKAKESASES ESEETPKEPE PATKAKSGKS QGSQSKSGKK RKR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)