AT3G54760.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : dentin sialophosphoprotein-related | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
dentin sialophosphoprotein-related; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol; EXPRESSED IN: guard cell, cultured cell; BEST Arabidopsis thaliana protein match is: Tudor/PWWP/MBT superfamily protein (TAIR:AT5G02950.1); Has 25330 Blast hits to 15408 proteins in 1388 species: Archae - 237; Bacteria - 6371; Metazoa - 7552; Fungi - 2715; Plants - 1153; Viruses - 230; Other Eukaryotes - 7072 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:20269659..20272037 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 86138.30 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 4.08 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.85 | ||||||||||||||||||||||||||||
| Length | 792 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEEPREESEA VRDCSEPMEE AGKGSGLSSK TETLVDEDAN TDLGVSDKNP NDGGLATVDV DDDDDVKRTD AVTEIECEGD TGTVEVKLND ETAKSEVKSK 101: SGATHETAGE EETENSVANE ATDEKATCEV EDNGGVCDAE QDVETENFQL NPVHGETLSV AEDKADQEKE TTKKIEKDIN EMEVDSKQED EENETEDAKH 201: SESAQVPEES TKLSKEETDE ENQKEENGVA MEIDGVAGEH VEKVVKVGSG SDNACNESAG ASMVQTQDVP IAEADNNESN VVKKMEIDER KDNADMTSDL 301: TGTIESADSA IPNSPTEDAA PGEVEPLDHN ALFDPTSDIT NFIDFSGVSS WSGNIQDLKT ETGNVSLKED KKVTDMAEDV VTADIETESN EARVGVGAES 401: PAAATDCSKE TSDATLGSEE NQQDKDHQCL DKKTADVQDT MIEEDDITHE APSFDPNQKE NAEMEENHNN FVYADDEAGS DVKTNGVKRK ADVLSEDSPG 501: EGRKTVSFAK VSFAERPSFK IGACIARAAS QMAGSPSVLK GSNFGDETLS VESFVSQLHC AATDPVKENV VSDIATGFFL DFRNSSASQQ VTTEKVSKKR 601: GRPSNSNVAG TEAFEFEEMG DTYWTDRVIH NGGEGQTPAT EKGNYQVVPV ELKPAQVQRT RRPYRRRQSQ ISIPHSATKK PADIDENAPA EIIMNFFETD 701: TIPPEKSLSK MFRHFGPIQE LRTEVDREKN RARVVFRKGA DAEVAYNSAG RFNIFGTKVV KYELSRNVTE TFKVQPYVVS LAEEDAAVCP SS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)