AT5G46070.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.500 nucleus 0.500 ASURE: cytosol,nucleus What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Guanylate-binding family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Guanylate-binding family protein; FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: immune response; LOCATED IN: nucleolus, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Guanylate-binding protein, N-terminal (InterPro:IPR015894), Guanylate-binding protein, C-terminal (InterPro:IPR003191); BEST Arabidopsis thaliana protein match is: guanylate-binding family protein (TAIR:AT1G03830.2); Has 135716 Blast hits to 74856 proteins in 3470 species: Archae - 1642; Bacteria - 27962; Metazoa - 58309; Fungi - 11332; Plants - 7596; Viruses - 496; Other Eukaryotes - 28379 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:+:18683468..18688397 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 122784.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.59 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.76 | ||||||||||||||||||||||||||||||||||||||||
| Length | 1082 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MRSFFGRGGK DSPADSASPS PRSYPSTSPA SSSAVTGPPR PIRLVYCDEK GKFRMDPEAV ATLQLVKEPI GVVSVCGRAR QGKSFILNQL LGRSNGFQVA 0101: STHKPCTKGL WLWSSPIKRT ALDGTEYNLL LLDSEGIDAY DQTGTYSTQI FSLAVLLSSM FVYNQMGGID EASLDRLSLV TQMTKHIRVK ASGGTSSRSE 0201: LGQFSPIFVW LLRDFYLDLV EDNRKISPRD YLEIALRPVQ GSGGDIGAKN EIRDSIRALF PDRECFTLVR PLNNEKDLQR LDQISLEKLR PEFGAGLDAF 0301: TKFVFEKTRP KQLGGTVMTG PILVGITQSY LDALNNGAVP TITSSWQSVE ETECRRAYDS GVEAYMAAFD QSKAPEEGAL REEHEEAVRK ALAIFNSNAV 0401: GNGSARKKFE DLLHKDLKKK FEDYKKNAFM EADLRCTSTI QRMEKQLRAA CHASNANMDN VVKVLEARLA EYEASCHGPG KWQKLSVFLQ QSLEGPIYDL 0501: TKRLIDSIAI EKNSLAMKFR SVEDAMKHLK QQLDDSERYK LEYQKRYDES NNDKKKLEDI YRERITKLQG ENSSLNERCS TLVKTVESKK EEIKEWIRNY 0601: DQIVLKQKAV QEQLSSEMEV LRTRSTTSEA RVAAAREQAK SAAEETKEWK RKYDYAVGEA RSALQKAASV QERSGKETQL REDALREEFS ITLANKDEEI 0701: TEKATKLEKA EQSLTVLRSD LKVAESKLES FEVELASLRL TLSEMTDKLD SANKKALAYE KEANKLEQEK IRMEQKYRSE FQRFDEVKER CKAAEIEAKR 0801: ATELADKART DAVTSQKEKS ESQRLAMERL AQIERAERQV ENLERQKTDL EDELDRLRVS EMEAVSKVTI LEARVEEREK EIGSLIKETN AQRAHNVKSL 0901: EKLLDEERKA HIAANRRAEA LSLELQAAQA HVDNLQQELA QARLKETALD NKIRAASSSH GKRSRFEDVV DMDIGEGSDR ILRTNKRARS TRGDDHGPTD 1001: EGDEDFQSHQ DNGEEEEEED YRKLTVQNLK HELTKYDCGH LLLNRGHQNK KEILALYEAH VLPKKALARE EERKKQREVT SS |
||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)