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AT4G10710.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : global transcription factor C
Curator
Summary (TAIR10)
encodes a component of the FAcilitates Chromatin Transcription (FACT) complex, SPT16.Along with SSRP1 binds to the promoter of FLC.
Computational
Description (TAIR10)
global transcription factor C (SPT16); INVOLVED IN: vegetative to reproductive phase transition of meristem; LOCATED IN: nuclear euchromatin, FACT complex, nucleolus, nucleus; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1747, eukaryote (InterPro:IPR013719), Peptidase M24, structural domain (InterPro:IPR000994), FACT complex subunit Spt16p/Cdc68p (InterPro:IPR013953); BEST Arabidopsis thaliana protein match is: GTC2 (TAIR:AT4G10670.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:11964eggNOG:COG5406eggNOG:KOG1189EMBL:AB493678
EMBL:AF080119EMBL:AL161518EMBL:CP002687EnsemblPlants:AT4G10710
EnsemblPlants:AT4G10710.1entrez:826665Gene3D:3.40.350.10Gene3D:3.90.230.10
GeneID:826665Genevisible:O82491GO:GO:0005634GO:GO:0005719
GO:GO:0005730GO:GO:0006260GO:GO:0006281GO:GO:0006351
GO:GO:0006355GO:GO:0010228GO:GO:0035101Gramene:AT4G10710.1
hmmpanther:PTHR13980HOGENOM:HOG000209079InParanoid:O82491InterPro:IPR000994
InterPro:IPR013719InterPro:IPR013953InterPro:IPR029148InterPro:IPR029149
iPTMnet:O82491KEGG:ath:AT4G10710MEROPS:M24.974MINT:MINT-8061103
ncoils:CoilOMA:GRRSAYDPaxDb:O82491Pfam:O82491
Pfam:PF00557Pfam:PF08512Pfam:PF08644Pfam:PF14826
PhylomeDB:O82491PIR:T01906PRIDE:O82491PRO:PR:O82491
ProteinModelPortal:O82491Proteomes:UP000006548Reactome:R-ATH-674695RefSeq:NP_192809.1
SMART:SM01285SMART:SM01286SMART:SM01287SMR:O82491
STRING:3702.AT4G10710.1SUPFAM:SSF55920TAIR:AT4G10710tair10-symbols:SPT16
UniGene:At.27606UniProt:O82491
Coordinates (TAIR10) chr4:-:6602226..6605450
Molecular Weight (calculated) 120592.00 Da
IEP (calculated) 5.84
GRAVY (calculated) -0.61
Length 1074 amino acids
Sequence (TAIR10)
(BLAST)
0001: MADSRNGNAR APPSGVPPKA GNTYSIDVKN FISRARALYE HWKKHSADLW GSADALAIAT PPASDDLRYL KSSALNIWLL GYEFPDTIMV FTKKQIHFLC
0101: SRNKASLLEV VKKPAHDELK LDVIMHVKPK GDDGTGLMDA IFRAIRDLSR GDGNDSQVVG HIAREAPEGK LLETWTERLK NANFQFVDIT GGLSDLFAVK
0201: DDTEVMSVKK AAYLAYSVMK NVVVPNLESA IDEEKDVTHS ALMDLTEKAI LEPTKASVKL KPENVDICYP PIFQSGGKFD LKPSAASNDE LLTYDPASII
0301: ICAVGARYNS YCSNVARTYL IDATSLQSKA YEVLLKAHEA AIDALRSGRK INTVYQAALS VVEKNAPEFV DKLTKSAGTG IGLEFRESGL NINAKNDKVL
0401: RPKMAFNVSL GFQNLECESE SRSKNKKFSL LLADTVLVTD QKPELLTKCS KSVKDVAYSF KEDEEEEKPR KKARTSGSEN YITKTALRSD DHVVSKEELR
0501: KQHQAELARQ KNEETARRLA GDSSGAGDSR STAKTSADVV AYKNVNDMPH KELMIQVDTR NEAVLLPIYG SLVPFHVATI RTVSGNQDTN RNCYIRIIFN
0601: VPGTPFNPHD SNSLKNQGAI YLKEVSFRTK DSRHSSEVTQ QIKTLRRQVM ARESERAERA TLVTQEKLQL AGNKFKPLRL SELWIRPPFS GRKKIPGTLE
0701: AHANGFRYST TRPDERVDVL FANIKHAFFQ PAEKEMITLL HFHLHNHIMV GTKKTKDVQF YVEVMDVVQS LGGGRRSAYD PDEIDEEQRE RDRKNKINMD
0801: FNHFANRVND MWQLPQFASL DLEFDQPLRE LGFHGVPHKT SAFIIPTSSC LVELIEYPFL VVSLSEIEIV NLERVGFGQK NFDMAIIFKD FKKDVLRVDS
0901: VPTSSLEGIK EWLDTTDIKY YESKLNLNWR QILKTITDDP QSFIDDGGWE FLNLDGSDSE SGGSEESDKG YEPSDVEVES ESEDEASESE SLVESDDDEE
1001: EDSEQESEEE KGKTWDELER EATNADREHG VESDSEEERK RRKMKAFGKS RPGTSGGGGS SSMKNMPPSK RKHR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)