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AT3G45830.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02290.1); Has 499 Blast hits to 438 proteins in 100 species: Archae - 0; Bacteria - 7; Metazoa - 236; Fungi - 15; Plants - 108; Viruses - 2; Other Eukaryotes - 131 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410YHF2eggNOG:KOG1927EMBL:AL162459EMBL:CP002686
EnsemblPlants:AT3G45830EnsemblPlants:AT3G45830.1entrez:823726GeneID:823726
GO:GO:0003677GO:GO:0031011Gramene:AT3G45830.1hmmpanther:PTHR13052
hmmpanther:PTHR13052:SF0HOGENOM:HOG000241167InterPro:IPR024867KEGG:ath:AT3G45830
KO:K11671ncoils:CoilOMA:NDWQRGQPANTHER:PTHR13052
PhylomeDB:Q9LZU7PIR:T47523PRO:PR:Q9LZU7Proteomes:UP000006548
RefSeq:NP_190169.1STRING:3702.AT3G45830.1TAIR:AT3G45830UniGene:At.46487
UniProt:Q9LZU7
Coordinates (TAIR10) chr3:+:16841277..16845173
Molecular Weight (calculated) 147095.00 Da
IEP (calculated) 5.21
GRAVY (calculated) -0.92
Length 1298 amino acids
Sequence (TAIR10)
(BLAST)
0001: MAIEKSNVKV SRFDLEYSHG SGDSMSSYEE RRKNSVVNNV DSEDEDDDFD EDDSGAGSDD FDLLELAETG AEFCQVGNVT CSIPFELYDL PSLEDILSVD
0101: VWNECLTEKE RFSLSSYLPD VDQLTFMRTL KELFEGCNFH FGSPVKKLFD MLKGGQCEPR NTLYLEGRSL FLRTKHYHSL RKYHNDMVVN LCQTRDAWTS
0201: CKGYSIDEKL RVLNIVKSQK TLMREKKDDF EDDSSEKDEP FDKPWGRKGK DRKSTQKKLA RHAGYGVDSG LEFPRRQLAA VEQDLYGKPK SKPKFPFAKT
0301: SVGPYATGYN GYGMNSAYNP SSLVRQRYGS EDNIDDDDQD PLFGMGSRRD REKPGYSRPG KKHKSSRDGE PISEHFMGPP YSSRQYHSNY SKSSRYANNI
0401: QPHAFADQMK PVKGSLADLR GDLYRHGKNH GDGFSVDPRY ISDDLNSKSK KLKSERDSPD TSLRSYRASM QQMNERFLNS DFGENHVQEK IRVNVVPNAR
0501: SGVAAFRDSR MFMGNDDTES DSSHGYDDEE ERNRLMRNKS SVSVGGMNNS HFPILKSRQD IKKSKSRKKD MQENELLDGR SAYLKYLGVS GEHIYAPGTE
0601: KHSFKSKQKG KMRDRSPLEN FSSRDFEDGP ITSLSEFQDR NNRKEFFRSN RNSQTREQMI DRTLFQRPSA KPNLSGRKRV FDEDDESHEM RTLVNARDRL
0701: SRKYQVSEDD GNSGDENLEA RLFVSCNALS KKRKTRESLM DMERREDNGD LQLYPDIQLP VGDVTVSKRK GKKKMEVDVG FLDLETSDIP KASEAEVETK
0801: PQKKPFVLIT PTVHTGFSFS IVHLLSAVRM AMTSLRPEDS LDVSKSVAVE NAEHETGENG ASVPEEAEDN KSPQQGNGNL PSLTIQEIVS CVKSNPGDPC
0901: ILETQEPLQD LIRGVLKIFS SKTSPLGAKG WKPLVTFERS TKCWSWIGPV LGPSDQETVE EVTSPEAWSL PHKMLVKLVD SFANWLKTGQ ETLQQIGSLP
1001: EPPLSLMQCN LDEKERFKDL RAQKSLSTIT QSSEEARAYF RKEEFLRYSI PDRAFVYTAA DGKKSIVAPL RRGGGKPTSK ARDHFMLKRE RPPHVTILCL
1101: VRDAAARLPG SIGTRADVCT LIRDSQYIVE DVSDSQVNQV VSGALDRLHY ERDPCVQFDS ERKLWVYLHR DREQEDFEDD GTSSTKKWKR PKKEAAEQTE
1201: EQEAVTVAFL GNEEQTETEM GSEPKTGEPT GLDGDQGATD QLCNETEQAA EEQDGENTAQ GNEPTIWEPD PAVVSNPVED NTFICQENSV NDDFDDET
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)