AT3G45830.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02290.1); Has 499 Blast hits to 438 proteins in 100 species: Archae - 0; Bacteria - 7; Metazoa - 236; Fungi - 15; Plants - 108; Viruses - 2; Other Eukaryotes - 131 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:16841277..16845173 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 147095.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.21 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.92 | ||||||||||||||||||||||||||||||||
| Length | 1298 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MAIEKSNVKV SRFDLEYSHG SGDSMSSYEE RRKNSVVNNV DSEDEDDDFD EDDSGAGSDD FDLLELAETG AEFCQVGNVT CSIPFELYDL PSLEDILSVD 0101: VWNECLTEKE RFSLSSYLPD VDQLTFMRTL KELFEGCNFH FGSPVKKLFD MLKGGQCEPR NTLYLEGRSL FLRTKHYHSL RKYHNDMVVN LCQTRDAWTS 0201: CKGYSIDEKL RVLNIVKSQK TLMREKKDDF EDDSSEKDEP FDKPWGRKGK DRKSTQKKLA RHAGYGVDSG LEFPRRQLAA VEQDLYGKPK SKPKFPFAKT 0301: SVGPYATGYN GYGMNSAYNP SSLVRQRYGS EDNIDDDDQD PLFGMGSRRD REKPGYSRPG KKHKSSRDGE PISEHFMGPP YSSRQYHSNY SKSSRYANNI 0401: QPHAFADQMK PVKGSLADLR GDLYRHGKNH GDGFSVDPRY ISDDLNSKSK KLKSERDSPD TSLRSYRASM QQMNERFLNS DFGENHVQEK IRVNVVPNAR 0501: SGVAAFRDSR MFMGNDDTES DSSHGYDDEE ERNRLMRNKS SVSVGGMNNS HFPILKSRQD IKKSKSRKKD MQENELLDGR SAYLKYLGVS GEHIYAPGTE 0601: KHSFKSKQKG KMRDRSPLEN FSSRDFEDGP ITSLSEFQDR NNRKEFFRSN RNSQTREQMI DRTLFQRPSA KPNLSGRKRV FDEDDESHEM RTLVNARDRL 0701: SRKYQVSEDD GNSGDENLEA RLFVSCNALS KKRKTRESLM DMERREDNGD LQLYPDIQLP VGDVTVSKRK GKKKMEVDVG FLDLETSDIP KASEAEVETK 0801: PQKKPFVLIT PTVHTGFSFS IVHLLSAVRM AMTSLRPEDS LDVSKSVAVE NAEHETGENG ASVPEEAEDN KSPQQGNGNL PSLTIQEIVS CVKSNPGDPC 0901: ILETQEPLQD LIRGVLKIFS SKTSPLGAKG WKPLVTFERS TKCWSWIGPV LGPSDQETVE EVTSPEAWSL PHKMLVKLVD SFANWLKTGQ ETLQQIGSLP 1001: EPPLSLMQCN LDEKERFKDL RAQKSLSTIT QSSEEARAYF RKEEFLRYSI PDRAFVYTAA DGKKSIVAPL RRGGGKPTSK ARDHFMLKRE RPPHVTILCL 1101: VRDAAARLPG SIGTRADVCT LIRDSQYIVE DVSDSQVNQV VSGALDRLHY ERDPCVQFDS ERKLWVYLHR DREQEDFEDD GTSSTKKWKR PKKEAAEQTE 1201: EQEAVTVAFL GNEEQTETEM GSEPKTGEPT GLDGDQGATD QLCNETEQAA EEQDGENTAQ GNEPTIWEPD PAVVSNPVED NTFICQENSV NDDFDDET |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)