AT5G53440.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:21683679..21687970 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 133366.00 Da | ||||||||||||||||||||||||
| IEP (calculated) | 5.10 | ||||||||||||||||||||||||
| GRAVY (calculated) | -1.53 | ||||||||||||||||||||||||
| Length | 1181 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MPRSTRHKSS KHKDATKEYS DSEKETSLKE KKSKEESSTT VRVSKESGSG DKRKEYYDSV NGEYYEEYTS SSSKRRKGKS GESGSDRWNG KDDDKGESSK 0101: KTKVSSEKSR KRDEGDGEET KKSSGKSDGK HRESSRRESK DVDKEKDRKY KEGKSDKFYD GDDHHKSKAG SDKTESKAQD HARSPGTENY TEKRSRRKRD 0201: DHGTGDKHHD NSDDVGDRVL TSGDDYIKDG KHKGEKSRDK YREDKEEEDI KQKGDKQRDD RPTKEHLRSD EKLTRDESKK KSKFQDNDHG HEPDSELDGY 0301: HERERNRDYD RESDRNERDR ERTRDRDRDY ERDRDRDRDR DRERDRDRRD YEHDRYHDRD WDRDRSRDRD RDHERDRTHD REKDRSRDYY HDGKRSKSDR 0401: ERDNDRDVSR LDDQSGRYKD RRDGRRSPDY QDYQDVITGS RSSRVEPDGD MTRPERQLSS SVVQEENGNA SDQITKGASS REVAELSGGS ERGTRQKVSE 0501: KTANMEDGVL GEFPAERSFA AKASPRPMVE RSPSSTSLER RYNNRGGARR SIEVEETGHR NNARDYSATE EERHLVDETS QAELSFNNKA NQNNSSFPPR 0601: PESRSGVSSP RVGPREEDNR VNTGGRYKRG GVDAMMGRGQ SNMWRGVPSW PSPLSNGYFP FQHVPPHGAF QTMMPQFPSP ALFGVRPSME MNHQGISYHI 0701: PDAERFSGHM RPLGWQNMMD SSGASHMHGF FGDMSNSVRD ESNMYGGSEW DQNRRMNGRG WESGADEWKS RNGDASMEVS SMSVKDDNSA QVADDESLGG 0801: QTSHSDNNRA KSVEAGSNLT SPAKELHASS PKTMEEVAAD DPVSETIDNT ERYCRHYLSK LDVSAGLADA ELRKCISLLI GEEHLAMDDG TAVFVNLKEG 0901: GKRVTKSNSN SLKALSLFPS QNSSVFQIAM DFYKEQRFEI KGLPNVKNHE APQVPPSNLV KVENNDDLND ARNGNSSIEA TDMKIADVSD SDTSQKELQK 1001: VSSNAGAKME TETRDEGSSS PNPDNSPEAL NAVSSDHIEG SEEAMASDHI EGSEEAVALD HIEGDEQEAK LDDGAGVDQT METAPEHDGV PEGDAVTLTV 1101: APPTLEAMDV DERKDLSEDE NMEEAEEKKG ANDGEEAEAD DGDGDGSVVV GDVSPKVTEP LVHESDESVI SRIHHSPQST H |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)