AT3G09850.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : D111/G-patch domain-containing protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
D111/G-patch domain-containing protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: D111/G-patch (InterPro:IPR000467); BEST Arabidopsis thaliana protein match is: GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (TAIR:AT1G17070.1); Has 4043 Blast hits to 2784 proteins in 353 species: Archae - 19; Bacteria - 864; Metazoa - 1783; Fungi - 478; Plants - 347; Viruses - 9; Other Eukaryotes - 543 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:3023397..3025742 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 84226.30 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.57 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.91 | ||||||||||||||||||||||||||||||||
| Length | 781 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRGGGRRRSN GGGSSGKNKA KSPGQSTRTN HNSAAGSSSG GRHRRQNNTT LFVEGGILSD YRKDPNFSTP SRGGSSSGKG LRSRSIERVK ASASTSGPRK 101: CSGNTYVYQY PSIDFEEGLD RRSGVESDQM NESPLVLGKS EATQIVAFLD QTPSSSKGIK VSYDYEYEPS YVLGDDSHKG LGFCDDSDAT PSGSLSIPKA 201: LGDQGGSFSH EEEGDAVDES GGNDDELMPD VVKTPKRRNS GFISIGGMKL YTEDVSGEES DGEEEMNDDD DDESGDEGSS GSSELSESDS SEDMFGSYSE 301: IDDDVAKDYL EGIGGSEIML DAHWLAEQSL DKLDLSSDDS SSSDSSDRKT RKLTGIRLQK ASMEYGKKKT TRSGYSGHGK STNPLAMDDL MFVKDPRSLS 401: GKKNKKKEVA KFPQSWPSRA PKSKNSRSFP GENKKHRKEY IALKRRERML QRGVDLADIN SQLENFVLEN VDMHCFQRMH NRDCSQVRRL ADVYRLSSSC 501: NGSGKKSFVT VTRTYQTCMP SASDKLRIEK LIGAGDEDCD FAVSGGVKGK SGSLDRKKAK DSAKKRPTRE ERERNKSNGK KSSYADQPVS FVSSGIIDSE 601: IAVAKTSVEK VAKEVAETTP GTSNGADIGA FEVHTRGFGS KMMAKMGFID GGGLGKDGKG IAQPIEAVQR PKSLGLGLDF SIDTEDPSPS SNNNNNAKRN 701: RSSSSGKHGK RITHDNGASG SGRIRDKRLG AFEQHTTGFG SRMMARMGFV EGSGLGRESQ GIVNPLVAVR RPRARGIGAE G |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)