AT2G26920.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Ubiquitin-associated/translation elongation factor EF1B protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Ubiquitin-associated/translation elongation factor EF1B protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: Ubiquitin-associated/translation elongation factor EF1B protein (TAIR:AT5G12120.1); Has 396 Blast hits to 387 proteins in 96 species: Archae - 0; Bacteria - 14; Metazoa - 132; Fungi - 65; Plants - 58; Viruses - 1; Other Eukaryotes - 126 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:11489648..11491588 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 71061.70 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.28 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.80 | ||||||||||||||||||||||||||||||||||||
| Length | 646 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MFFAEMSPAT KSKSKDKKTG KEAQKASPKP SLSVNGNSSL AASGYNPLLG TFQALDSVSI ASISPLQYSR FRSIDEADVN GIESDSVSNN GSCSGESEDH 101: KEKTTNLPLK QEVIPGADND KREKVRQKNE RKHQRQKERR AQELNEKCST YLISRKLEAR TQQIVAMGIS QEHATTALMM NDGKVEESVH WLFDRLEEEI 201: EKQSIQSPGN LKIDITEELA RITKMELQLK CTRQEIERAV VQAEGDLDRA EEVLKGTKYE EFSVPVKQEE CGDPLTPSNG KLIVGIGYQN SDVERSEIPS 301: PGLHPTRDDK NFNYTKSPST TESVNKMLAQ PMKRPELKLD WPKPQQSAAL ADKRWPPTTG QVPSASYSLP SSPSPSPQPA VRVEARYLAS GNEFKNFQQQ 401: QQQPANRESV MVMRQRPQVV ITNPVPTSSM SAPPTSWHPA ASIEIMKSNG FMQTHNIPSA RSPSPNHLNP NQVYQQLQYQ NQKRFTNNNQ VDPHGSMARG 501: NGGQWTRNTA SSPPISAASS LGLFSAVGSA GTSGASSPID WISGGSVDYT NIDWSLDQSL SQNSRVNGNW SGLKSSSQIY DENMNRYSLN GSMGGRLNNS 601: NGVSMENSGA GVIVETQQAA TSPDWTSPFE GKDIFSLSRQ YVSPSL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)