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AT5G11530.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : embryonic flower 1 (EMF1)
Curator
Summary (TAIR10)
Involved in regulating reproductive development
Computational
Description (TAIR10)
embryonic flower 1 (EMF1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:16303eggNOG:ENOG410IX0BeggNOG:ENOG410ZCY5EMBL:AF319968
EMBL:AL163815EMBL:CP002688EMBL:EF598316EMBL:EF598317
EMBL:EF598318EMBL:EF598319EMBL:EF598320EMBL:EF598321
EMBL:EF598322EMBL:EF598323EMBL:EF598324EMBL:EF598325
EMBL:EF598326EMBL:EF598327EMBL:EF598328EMBL:EF598329
EMBL:EF598330EMBL:EF598331EnsemblPlants:AT5G11530EnsemblPlants:AT5G11530.1
entrez:831025GeneID:831025Genevisible:Q9LYD9GO:GO:0003690
GO:GO:0003697GO:GO:0003723GO:GO:0005634GO:GO:0009791
GO:GO:0009910GO:GO:0010022GO:GO:0016571GO:GO:0042538
GO:GO:0045892GO:GO:0048367GO:GO:0070734Gramene:AT5G11530.1
hmmpanther:PTHR35504HOGENOM:HOG000153174InParanoid:Q9LYD9KEGG:ath:AT5G11530
OMA:MGATSENPaxDb:Q9LYD9Pfam:Q9LYD9PhylomeDB:Q9LYD9
PIR:T48512PRIDE:Q9LYD9PRO:PR:Q9LYD9ProteinModelPortal:Q9LYD9
Proteomes:UP000006548RefSeq:NP_196714.1STRING:3702.AT5G11530.1TAIR:AT5G11530
tair10-symbols:EMF1UniGene:At.43396UniProt:Q9LYD9
Coordinates (TAIR10) chr5:+:3697140..3700930
Molecular Weight (calculated) 121677.00 Da
IEP (calculated) 9.82
GRAVY (calculated) -0.88
Length 1096 amino acids
Sequence (TAIR10)
(BLAST)
0001: MGSSIKINSI SIDLAGAANE IDMVKCDHFS MRGFVAETRE RDLRKCWPFS EESVSLVDQQ SYTLPTLSVP KFRWWHCMSC IKDIDAHGPK DCGLHSNSKA
0101: IGNSSVIESK SKFNSLTIID HEKEKKTDIA DNAIEEKVGV NCENDDQTAT TFLKKARGRP MGASNVRSKS RKLVSPEQVG NNRSKEKLNK PSMDISSWKE
0201: KQNVDQAVTT FGSSEIAGVV EDTPPKATKN HKGIRGLMEC DNGSSESINL AMSGLQRRKS RKVRLLSELL GNTKTSGGSN IRKEESALKK ESVRGRKRKL
0301: LPENNYVSRI LSTMGATSEN ASKSCDSDQG NSESTDSGFD RTPFKGKQRN RRFQVVDEFV PSLPCETSQE GIKEHDADPS KRSTPAHSLF TGNDSVPCPP
0401: GTQRTERKLS LPKKKTKKPV IDNGKSTVIS FSNGIDGSQV NSHTGPSMNT VSQTRDLLNG KRVGGLFDNR LASDGYFRKY LSQVNDKPIT SLHLQDNDYV
0501: RSRDAEPNCL RDFSSSSKSS SGGWLRTGVD IVDFRNNNHN TNRSSFSNLK LRYPPSSTEV ADLSRVLQKD ASGADRKGKT VMVQEHHGAP RSQSHDRKET
0601: TTEEQNNDDI PMEIVELMAK NQYERCLPDK EEDVSNKQPS QETAHKSKNA LLIDLNETYD NGISLEDNNT SRPPKPCSSN ARREEHFPMG RQQNSHDFFP
0701: ISQPYVPSPF GIFPPTQENR ASSIRFSGHN CQWLGNLPTV GNQNPSPSSF RVLRACDTCQ SVPNQYREAS HPIWPSSMIP PQSQYKPVSL NINQSTNPGT
0801: LSQASNNENT WNLNFVAANG KQKCGPNPEF SFGCKHAAGV SSSSSRPIDN FSSESSIPAL HLLSLLDPRL RSTTPADQHG NTKFTKRHFP PANQSKEFIE
0901: LQTGDSSKSA YSTKQIPFDL YSKRFTQEPS RKSFPITPPI GTSSLSFQNA SWSPHHQEKK TKRKDTFAPV YNTHEKPVFA SSNDQAKFQL LGASNSMMLP
1001: LKFHMTDKEK KQKRKAESCN NNASAGPVKN SSGPIVCSVN RNPADFTIPE PGNVYMLTGE HLKVRKRTTF KKKPAVCKQD AMKQTKKPVC PPTQNA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)