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AT3G21295.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tudor/PWWP/MBT superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tudor/PWWP/MBT superfamily protein; CONTAINS InterPro DOMAIN/s: PWWP (InterPro:IPR000313); BEST Arabidopsis thaliana protein match is: Tudor/PWWP/MBT superfamily protein (TAIR:AT1G51745.1); Has 561 Blast hits to 428 proteins in 108 species: Archae - 2; Bacteria - 226; Metazoa - 60; Fungi - 64; Plants - 94; Viruses - 0; Other Eukaryotes - 115 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IIPFeggNOG:ENOG410YAAQEMBL:CP002686EnsemblPlants:AT3G21295
EnsemblPlants:AT3G21295.1entrez:5008017GeneID:5008017Gramene:AT3G21295.1
hmmpanther:PTHR33697hmmpanther:PTHR33697:SF1InParanoid:F4IXJ0InterPro:IPR000313
KEGG:ath:AT3G21295OMA:DQQSHSAPaxDb:F4IXJ0Pfam:PF00855
Pfscan:PS50812PRIDE:F4IXJ0PROSITE:PS50812ProteinModelPortal:F4IXJ0
Proteomes:UP000006548RefSeq:NP_001078195.1SMR:F4IXJ0SUPFAM:SSF63748
TAIR:AT3G21295UniGene:At.51364UniProt:F4IXJ0
Coordinates (TAIR10) chr3:+:7489635..7492296
Molecular Weight (calculated) 69862.30 Da
IEP (calculated) 10.33
GRAVY (calculated) -0.73
Length 645 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSSDERNCK AIDASVGGLV WVRRRNGAWW PGRIMAHHEV PDGTIVSPKS GTPIKLLGRD DASVDWYNLE KSKRVKAFRC GEYDACIATA KATASTTGKK
101: AVKYARREDA IAHALEIENA HLAKDHPPCI EKASTSGEVS RKGIEDSGDV AETEVALQST MSLKKTKNGK ASKVQPLSEK RRRTPNDSED DGTQTNKRMR
201: GLEDIGMGTG SKGKVQVGAL LEDTQENGFK SDTNNINDSV SNGSLSNGSS RDCSPSMKRK RSPVVIANDY SKRKNRRRTL TKVLESTATV SIPGTCDKLV
301: NSDCLSLPGV SESDNNSDSN EVFSENVSEN IVEVINDKGK ESEVSNISVL AKDDSSNGLF DVPLNGDEKY PSGISTVPFT SSSPRKALVS GPTRRFGQSS
401: HDDVVKSEGS NGSPSTSPAA TLFNGIKKST SKWQLKGKRN SRQMSKKQVE RRNAYAEEAN NNALPHWSVS DQKPRSLFSV GTQAMGRNSE LYDVKIEVKA
501: NYKPRNVPLI SLRSKLNGEA IVGHPSVVEV LEDGSCGHIV SSHRIDDAKP KPSSKKKSKK KKPHFPPQAS KSKKSSSLAI KTRCLSALSG QKLTLSSKKK
601: VMIESTKERI VACIPLKVVF SRINEAVKGS ARQVHRSLPS AGNTG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)