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AT5G50380.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:21433285 (2011): plasma membrane
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : exocyst subunit exo70 family protein F1
Curator
Summary (TAIR10)
A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.
Computational
Description (TAIR10)
exocyst subunit exo70 family protein F1 (EXO70F1); INVOLVED IN: exocytosis, vesicle docking involved in exocytosis; LOCATED IN: plasma membrane, exocyst; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Exo70 exocyst complex subunit (InterPro:IPR004140); BEST Arabidopsis thaliana protein match is: exocyst subunit exo70 family protein D3 (TAIR:AT3G14090.1); Has 952 Blast hits to 944 proteins in 146 species: Archae - 0; Bacteria - 2; Metazoa - 140; Fungi - 117; Plants - 671; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410YIGIeggNOG:KOG2344EMBL:CP002688EnsemblPlants:AT5G50380
EnsemblPlants:AT5G50380.1entrez:835106GeneID:835106GO:GO:0000145
GO:GO:0005829GO:GO:0005886GO:GO:0006887Gramene:AT5G50380.1
hmmpanther:PTHR12542hmmpanther:PTHR12542:SF19InParanoid:F4K8Y6InterPro:IPR004140
InterPro:IPR016159iPTMnet:F4K8Y6KEGG:ath:AT5G50380KO:K07195
ncoils:CoilOMA:REEMRINPANTHER:PTHR12542PaxDb:F4K8Y6
Pfam:PF03081PRIDE:F4K8Y6ProteinModelPortal:F4K8Y6Proteomes:UP000006548
Reactome:R-ATH-5620916RefSeq:NP_199849.2SMR:F4K8Y6STRING:3702.AT5G50380.1
SUPFAM:SSF74788TAIR:AT5G50380tair10-symbols:ATEXO70F1tair10-symbols:EXO70F1
UniGene:At.43001UniProt:F4K8Y6
Coordinates (TAIR10) chr5:-:20516382..20518433
Molecular Weight (calculated) 76621.60 Da
IEP (calculated) 4.84
GRAVY (calculated) -0.43
Length 683 amino acids
Sequence (TAIR10)
(BLAST)
001: MAATTTTAAS INAEAGGGGG GAEDRVLATA QQIMKSLNTP KEVREDMLLI FSSFDNRLSN IKTAMTNQEE NQNDALVARL EAAESVIHRW DGGNDSSRHS
101: SSSSGNYRSS SFSLSFDESP EEATEFLSAV DEIISLLEDL SSENKPDMVD RADSALQMAM SQLEDEFRRI LIRNTVPLDA ERLYGSMRRV SLSFADGDVV
201: EDFENFGLVA DGDGSGSRRR LFHERGGSIG CDLWVDLINP TAVEDLKEIA ERMIRAGYEK ECVQVYSSVR RDALDDCLMI LGVEKLSIEE VQKIDWKSMD
301: EKMKKWIQAV KITVRVLLVG EKKICDEIFS SSESSKEVCF NETTKSCVMQ LLNFGEAVAI GRRSSEKLFR ILDMYDALAN VLQTLEVMVT DCFVCNETKG
401: VLEALGDAAR GTFVEFENNV RNETSKRPTT NGEVHPMIRY VMNYMKLIVD YAVTLNSLLE SNESSGVSGD DSTEEMSPLA KRILGLITSL ESNLEDKSKL
501: YEDGGLQHVF MMNNIYYIVQ KVKDSELGKL LGDDWVRKRR GQIRQYATGY LRASWSRVLS ALRDESMGGS SSGSPSYGQR SNNSSKMALK ERFRGFNASF
601: EELYRLQTAW KVPDPQLREE LRISISEKVI PAYRAFFGRN RSQLEGGRHA GKYIKYTPDD LESYLPDLFE GNQLVIHHPR RKS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)