AT1G34190.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.860 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : NAC domain containing protein 17 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
NAC domain containing protein 17 (NAC017); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 16 (TAIR:AT1G34180.1); Has 2927 Blast hits to 2911 proteins in 78 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 2919; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:12451729..12453914 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 62590.10 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.56 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.56 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 557 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MADSSPDSCF KGGKFSAPGF RFHPTDEELV MYYLKRKICR KRLRVNVIGV VDVYKMDPEE LPGQSMLKTG DRQWFYFTPR SRKYPNAARS NRGTENGYWK 101: ATGKDRVIEY NSRSVGLKKT LVFYRGRAPS GERTDWVMHE YTMDEDELGR CKNPQEYYAL YKLFKKSGAG PKNGEQYGAP FQEEEWVDDD NEDVNAIAVA 201: VPEQPVVRYE DARRVDERRL FNPVILQLED IDELLNGIPN APGVPQRCIP QVNSEEELQS TLVNNSAREF LPNGQQYNRP SSFDSLETAE VTSAPLVFEK 301: EDFIEMDDLL LIPEFGASST EKAAQFSNHG EFDDFNEFDQ LFHDVSMSLD MEPIDQGTSA NLSSLSDSAN YTSDQKQQLL YQQFQDQTPE NQLNNIMDPS 401: TTLNQITSDI WFEDDQAILF DQQQSFSGAF ASPSSGVMPD STNPTMSVNA QGHEIQNGGG TTSQFSSALW ALMDSIPSTP ASACEGPLNR TFVRMSSFSR 501: MRFNGKANGT PVSTTIAKKG IRNRGFLLLS IVGALCAIFW VLVATVRVSG RSLLLKD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)