suba logo
AT1G34190.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 0.860
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NAC domain containing protein 17
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NAC domain containing protein 17 (NAC017); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 16 (TAIR:AT1G34180.1); Has 2927 Blast hits to 2911 proteins in 78 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 2919; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IFDCeggNOG:ENOG410Y9FREMBL:AC007454EMBL:AF361813
EMBL:AY133552EMBL:BT000730EMBL:CP002684EnsemblPlants:AT1G34190
EnsemblPlants:AT1G34190.1entrez:840318GeneID:840318Genevisible:Q9XIC5
GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0005789
GO:GO:0006351GO:GO:0016021GO:GO:0070301Gramene:AT1G34190.1
hmmpanther:PTHR31989hmmpanther:PTHR31989:SF27HOGENOM:HOG000253966InterPro:IPR003441
iPTMnet:Q9XIC5KEGG:ath:AT1G34190OMA:QFQDQTPPaxDb:Q9XIC5
Pfam:PF02365Pfam:Q9XIC5Pfscan:PS51005PhylomeDB:Q9XIC5
PIR:B86466PRIDE:Q9XIC5PRO:PR:Q9XIC5PROSITE:PS51005
ProteinModelPortal:Q9XIC5Proteomes:UP000006548RefSeq:NP_564440.1SMR:Q9XIC5
STRING:3702.AT1G34190.1SUPFAM:SSF101941TAIR:AT1G34190tair10-symbols:anac017
tair10-symbols:NAC017TMHMM:TMhelixUniGene:At.11394UniProt:Q9XIC5
Coordinates (TAIR10) chr1:+:12451729..12453914
Molecular Weight (calculated) 62590.10 Da
IEP (calculated) 4.56
GRAVY (calculated) -0.56
Length 557 amino acids
Sequence (TAIR10)
(BLAST)
001: MADSSPDSCF KGGKFSAPGF RFHPTDEELV MYYLKRKICR KRLRVNVIGV VDVYKMDPEE LPGQSMLKTG DRQWFYFTPR SRKYPNAARS NRGTENGYWK
101: ATGKDRVIEY NSRSVGLKKT LVFYRGRAPS GERTDWVMHE YTMDEDELGR CKNPQEYYAL YKLFKKSGAG PKNGEQYGAP FQEEEWVDDD NEDVNAIAVA
201: VPEQPVVRYE DARRVDERRL FNPVILQLED IDELLNGIPN APGVPQRCIP QVNSEEELQS TLVNNSAREF LPNGQQYNRP SSFDSLETAE VTSAPLVFEK
301: EDFIEMDDLL LIPEFGASST EKAAQFSNHG EFDDFNEFDQ LFHDVSMSLD MEPIDQGTSA NLSSLSDSAN YTSDQKQQLL YQQFQDQTPE NQLNNIMDPS
401: TTLNQITSDI WFEDDQAILF DQQQSFSGAF ASPSSGVMPD STNPTMSVNA QGHEIQNGGG TTSQFSSALW ALMDSIPSTP ASACEGPLNR TFVRMSSFSR
501: MRFNGKANGT PVSTTIAKKG IRNRGFLLLS IVGALCAIFW VLVATVRVSG RSLLLKD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)