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AT4G16430.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: ABA-inducible BHLH-type transcription factor (TAIR:AT2G46510.1); Has 2977 Blast hits to 2635 proteins in 177 species: Archae - 0; Bacteria - 0; Metazoa - 85; Fungi - 31; Plants - 2859; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
BioGrid:12630eggNOG:ENOG410IKIEeggNOG:ENOG41114N5EMBL:AF251688
EMBL:AF428368EMBL:AL161544EMBL:AY057626EMBL:BT002301
EMBL:CP002687EMBL:Z97341EnsemblPlants:AT4G16430EnsemblPlants:AT4G16430.1
entrez:827337Gene3D:4.10.280.10GeneID:827337Genevisible:O23487
GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351
GO:GO:0006355Gramene:AT4G16430.1hmmpanther:PTHR11514hmmpanther:PTHR11514:SF53
HOGENOM:HOG000238207InParanoid:O23487InterPro:IPR011598InterPro:IPR025610
KEGG:ath:AT4G16430ncoils:CoilOMA:TIGSEACPaxDb:O23487
Pfam:O23487Pfam:PF00010Pfam:PF14215Pfscan:PS50888
PhylomeDB:O23487PIR:A71431PRIDE:O23487PRO:PR:O23487
PROSITE:PS50888ProteinModelPortal:O23487Proteomes:UP000006548RefSeq:NP_193376.1
SMART:SM00353SMR:O23487STRING:3702.AT4G16430.1SUPFAM:SSF47459
TAIR:AT4G16430UniGene:At.33082UniGene:At.4413UniProt:O23487
Coordinates (TAIR10) chr4:+:9267599..9269002
Molecular Weight (calculated) 52236.60 Da
IEP (calculated) 6.85
GRAVY (calculated) -0.51
Length 467 amino acids
Sequence (TAIR10)
(BLAST)
001: MGQKFWENQE DRAMVESTIG SEACDFFIST ASASNTALSK LVSPPSDSNL QQGLRHVVEG SDWDYALFWL ASNVNSSDGC VLIWGDGHCR VKKGASGEDY
101: SQQDEIKRRV LRKLHLSFVG SDEDHRLVKS GALTDLDMFY LASLYFSFRC DTNKYGPAGT YVSGKPLWAA DLPSCLSYYR VRSFLARSAG FQTVLSVPVN
201: SGVVELGSLR HIPEDKSVIE MVKSVFGGSD FVQAKEAPKI FGRQLSLGGA KPRSMSINFS PKTEDDTGFS LESYEVQAIG GSNQVYGYEQ GKDETLYLTD
301: EQKPRKRGRK PANGREEALN HVEAERQRRE KLNQRFYALR AVVPNISKMD KASLLADAIT YITDMQKKIR VYETEKQIMK RRESNQITPA EVDYQQRHDD
401: AVVRLSCPLE THPVSKVIQT LRENEVMPHD SNVAITEEGV VHTFTLRPQG GCTAEQLKDK LLASLSQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)