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AT2G17980.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
ASURE: plasma membrane
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:22550958 (2012): plastid
  • PMID:21433285 (2011): plasma membrane
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Sec1/munc18-like (SM) proteins superfamily
Curator
Summary (TAIR10)
member of SLY1 Gene Family
Computational
Description (TAIR10)
ATSLY1; FUNCTIONS IN: protein transporter activity; INVOLVED IN: protein secretion, vesicle-mediated transport, vesicle docking involved in exocytosis; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sec1-like protein (InterPro:IPR001619); BEST Arabidopsis thaliana protein match is: Sec1/munc18-like (SM) proteins superfamily (TAIR:AT4G31740.1); Has 1583 Blast hits to 1569 proteins in 233 species: Archae - 0; Bacteria - 15; Metazoa - 661; Fungi - 409; Plants - 204; Viruses - 0; Other Eukaryotes - 294 (source: NCBI BLink).
Protein Annotations
BioGrid:1667eggNOG:COG5158eggNOG:KOG1301EMBL:AC006201
EMBL:AY050414EMBL:AY059659EMBL:CP002685EnsemblPlants:AT2G17980
EnsemblPlants:AT2G17980.1entrez:816310Gene3D:3.40.50.1910GeneID:816310
Genevisible:Q9SL48GO:GO:0005829GO:GO:0006904GO:GO:0015031
Gramene:AT2G17980.1hmmpanther:PTHR11679hmmpanther:PTHR11679:SF2HOGENOM:HOG000199564
InParanoid:Q9SL48IntAct:Q9SL48InterPro:IPR001619InterPro:IPR027482
iPTMnet:Q9SL48KEGG:ath:AT2G17980KO:K19998ncoils:Coil
OMA:DMHMNIAPANTHER:PTHR11679PaxDb:Q9SL48Pfam:PF00995
Pfam:Q9SL48PhylomeDB:Q9SL48PIR:G84558PIRSF:PIRSF005715
PRIDE:Q9SL48PRO:PR:Q9SL48ProteinModelPortal:Q9SL48Proteomes:UP000006548
Reactome:R-ATH-204005RefSeq:NP_179389.1SMR:Q9SL48STRING:3702.AT2G17980.1
SUPFAM:SSF56815TAIR:AT2G17980tair10-symbols:ATSLY1UniGene:At.13550
UniProt:Q9SL48
Coordinates (TAIR10) chr2:+:7824352..7826404
Molecular Weight (calculated) 69154.80 Da
IEP (calculated) 6.34
GRAVY (calculated) -0.25
Length 627 amino acids
Sequence (TAIR10)
(BLAST)
001: MALNLRQKQT ECVIRMLNLN QPLNPSGTAN EEVYKILIYD RFCQNILSPL THVKDLRKHG VTLFFLIDKD RQPVHDVPAV YFVQPTESNL QRIIADASRS
101: LYDTFHLNFS SSIPRKFLEE LASGTLKSGS VEKVSKVHDQ YLEFVTLEDN LFSLAQQSTY VQMNDPSAGE KEINEIIERV ASGLFCVLVT LGVVPVIRCP
201: SGGPAEMVAS LLDQKLRDHL LSKNNLFTEG GGFMSSFQRP LLCIFDRNFE LSVGIQHDFR YRPLVHDVLG LKLNQLKVQG EKGPPKSFEL DSSDPFWSAN
301: STLEFPDVAV EIETQLNKYK RDVEEVNKKT GGGSGAEFDG TDLIGNIHTE HLMNTVKSLP ELTERKKVID KHTNIATALL GQIKERSIDA FTKKESDMMM
401: RGGIDRTELM AALKGKGTKM DKLRFAIMYL ISTETINQSE VEAVEAALNE AEADTSAFQY VKKIKSLNAS FAATSANSAS RSNIVDWAEK LYGQSISAVT
501: AGVKNLLSSD QQLAVTRTVE ALTEGKPNPE IDSYRFLDPR APKSSSSGGS HVKGPFREAI VFMIGGGNYV EYGSLQELTQ RQLTVKNVIY GATEILNGGE
601: LVEQLGLLGK KMGLGGPVAS TSLSGGH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)