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AT4G00670.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.996
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Remorin family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Remorin family protein; CONTAINS InterPro DOMAIN/s: Remorin, C-terminal (InterPro:IPR005516); BEST Arabidopsis thaliana protein match is: Remorin family protein (TAIR:AT3G61260.1); Has 353 Blast hits to 353 proteins in 28 species: Archae - 0; Bacteria - 2; Metazoa - 1; Fungi - 8; Plants - 326; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).
Protein Annotations
EMBL:BT014759EMBL:BT015948EMBL:CP002687EnsemblPlants:AT4G00670
EnsemblPlants:AT4G00670.1entrez:828034GeneID:828034Gramene:AT4G00670.1
hmmpanther:PTHR31775IntAct:Q6IDB4InterPro:IPR005516KEGG:ath:AT4G00670
OMA:SAIMAWEPfam:PF03763PhylomeDB:Q6IDB4Proteomes:UP000006548
RefSeq:NP_191976.2TAIR:AT4G00670UniGene:At.25593UniGene:At.48814
UniProt:Q6IDB4
Coordinates (TAIR10) chr4:-:278434..279170
Molecular Weight (calculated) 14090.20 Da
IEP (calculated) 10.83
GRAVY (calculated) -1.04
Length 123 amino acids
Sequence (TAIR10)
(BLAST)
001: MEPNIPIQRG DEQSKVIKAW KELKITKVNN KTQKKLLDIS GWEKKKTTKI ESELARIQRK MDSKKMEKSE KLRNEKAAVH AKAQKKKADV QTRRAQEILD
101: AEEAAARFQA AGKIPKKSSL SCF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)