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AT1G73040.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.965
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Mannose-binding lectin superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Mannose-binding lectin superfamily protein; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: Mannose-binding lectin superfamily protein (TAIR:AT1G19715.2); Has 1381 Blast hits to 855 proteins in 48 species: Archae - 0; Bacteria - 13; Metazoa - 1; Fungi - 0; Plants - 1366; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IW7CeggNOG:ENOG410Y7QCEMBL:AC008017EMBL:BT021916
EMBL:BT030616EMBL:CP002684EnsemblPlants:AT1G73040EnsemblPlants:AT1G73040.1
entrez:843635Gene3D:2.100.10.30GeneID:843635Genevisible:Q9SSM3
GO:GO:0030246Gramene:AT1G73040.1hmmpanther:PTHR23244hmmpanther:PTHR23244:SF320
HOGENOM:HOG000237846InParanoid:Q9SSM3InterPro:IPR001229KEGG:ath:AT1G73040
OMA:AIVGFWGPaxDb:Q9SSM3Pfam:PF01419Pfam:Q9SSM3
Pfscan:PS51752PhylomeDB:Q9SSM3PIR:H96755PRO:PR:Q9SSM3
PROSITE:PS51752ProteinModelPortal:Q9SSM3Proteomes:UP000006548RefSeq:NP_177447.1
SMART:SM00915SMR:Q9SSM3SUPFAM:SSF51101TAIR:AT1G73040
UniGene:At.22952UniGene:At.71264UniProt:Q9SSM3
Coordinates (TAIR10) chr1:-:27475159..27475777
Molecular Weight (calculated) 19561.30 Da
IEP (calculated) 9.74
GRAVY (calculated) -0.53
Length 176 amino acids
Sequence (TAIR10)
(BLAST)
001: MDQQQQGDKN LTVFVGPWGG NGGTTWDDGI YDGVREIRLV YDHCIDSISV IYDKNGKPAK SEKHGGVGGN KTSEIKLQYP EEYLTGVSGY YCPMVNSGTP
101: VIRSMTFKSN KQVYGPYGVE QGTPFTFSVN GGRIVGMNGR SGWYLDSIGF HLSRPKSTKM INKLRKKIHW LTRIVA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)