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AT3G12750.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.998
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : zinc transporter 1 precursor
Curator
Summary (TAIR10)
A member of Zrt- and Irt-related protein (ZIP) family. transcript is induced in response to zinc deficiency in the root.
Computational
Description (TAIR10)
zinc transporter 1 precursor (ZIP1); FUNCTIONS IN: zinc ion transmembrane transporter activity; INVOLVED IN: response to zinc ion, zinc ion transport; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc/iron permease, fungal/plant (InterPro:IPR004698), Zinc/iron permease (InterPro:IPR003689); BEST Arabidopsis thaliana protein match is: zinc transporter 5 precursor (TAIR:AT1G05300.1); Has 2022 Blast hits to 1850 proteins in 281 species: Archae - 0; Bacteria - 109; Metazoa - 565; Fungi - 630; Plants - 510; Viruses - 0; Other Eukaryotes - 208 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111GP2eggNOG:KOG1558EMBL:AB024033EMBL:AF033535
EMBL:CP002686EnsemblPlants:AT3G12750EnsemblPlants:AT3G12750.1entrez:820457
ExpressionAtlas:O81123GeneID:820457Genevisible:O81123GO:GO:0005385
GO:GO:0005886GO:GO:0016021Gramene:AT3G12750.1hmmpanther:PTHR11040
hmmpanther:PTHR11040:SF59HOGENOM:HOG000157076InterPro:IPR003689InterPro:IPR004698
KEGG:ath:AT3G12750KO:K14709OMA:TAPMGIAPaxDb:O81123
Pfam:O81123Pfam:PF02535PhylomeDB:O81123PIR:T52183
PRIDE:O81123PRO:PR:O81123Proteomes:UP000006548RefSeq:NP_187881.1
STRING:3702.AT3G12750.1TAIR:AT3G12750tair10-symbols:ZIP1TCDB:2.A.5.1.3
TIGRfam:TIGR00820TIGRFAMs:TIGR00820TMHMM:TMhelixUniGene:At.21212
UniGene:At.48651UniProt:O81123UniProt:Q0WW28
Coordinates (TAIR10) chr3:-:4051950..4053156
Molecular Weight (calculated) 37814.60 Da
IEP (calculated) 6.71
GRAVY (calculated) 0.52
Length 355 amino acids
Sequence (TAIR10)
(BLAST)
001: MSECGCFSAT TMLRICVVLI ICLHMCCASS DCTSHDDPVS QDEAEKATKL KLGSIALLLV AGGVGVSLPL IGKRIPALQP ENDIFFMVKA FAAGVILCTG
101: FVHILPDAFE RLSSPCLEDT TAGKFPFAGF VAMLSAMGTL MIDTFATGYY KRQHFSNNHG SKQVNVVVDE EEHAGHVHIH THASHGHTHG STELIRRRIV
201: SQVLEIGIVV HSVIIGISLG ASQSIDTIKP LMAALSFHQF FEGLGLGGCI SLADMKSKST VLMATFFSVT APLGIGIGLG MSSGLGYRKE SKEAIMVEGM
301: LNAASAGILI YMSLVDLLAT DFMNPRLQSN LWLHLAAYLS LVLGAGSMSL LAIWA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)