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AT1G60960.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
ASURE: plasma membrane
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:17151019 (2007): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : iron regulated transporter 3
Curator
Summary (TAIR10)
Encodes a plasma membrane localized zinc/iron transporter.
Computational
Description (TAIR10)
iron regulated transporter 3 (IRT3); FUNCTIONS IN: cation transmembrane transporter activity, zinc ion transmembrane transporter activity, metal ion transmembrane transporter activity, iron ion transmembrane transporter activity; INVOLVED IN: cation transport, zinc ion transport, response to nematode, iron ion transport, metal ion transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Zinc/iron permease, fungal/plant (InterPro:IPR004698), Zinc/iron permease (InterPro:IPR003689); BEST Arabidopsis thaliana protein match is: zinc transporter 4 precursor (TAIR:AT1G10970.1); Has 3842 Blast hits to 3068 proteins in 499 species: Archae - 2; Bacteria - 683; Metazoa - 1421; Fungi - 659; Plants - 616; Viruses - 7; Other Eukaryotes - 454 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111GP2eggNOG:KOG1558EMBL:AC018908EMBL:AF369915
EMBL:AY085604EMBL:CP002684EnsemblPlants:AT1G60960EnsemblPlants:AT1G60960.1
entrez:842387GeneID:842387Genevisible:Q8LE59GO:GO:0005381
GO:GO:0005385GO:GO:0005774GO:GO:0005886GO:GO:0006826
GO:GO:0006829GO:GO:0009535GO:GO:0009624GO:GO:0016021
GO:GO:0034755GO:GO:0055072Gramene:AT1G60960.1hmmpanther:PTHR11040
hmmpanther:PTHR11040:SF52HOGENOM:HOG000157076InParanoid:Q8LE59InterPro:IPR003689
InterPro:IPR004698KEGG:ath:AT1G60960KO:K14709OMA:LKNPCLP
PaxDb:Q8LE59Pfam:PF02535Pfam:Q8LE59PIR:B96635
PRIDE:Q8LE59PRO:PR:Q8LE59ProteinModelPortal:Q8LE59Proteomes:UP000006548
RefSeq:NP_564766.1STRING:3702.AT1G60960.1TAIR:AT1G60960tair10-symbols:ATIRT3
tair10-symbols:IRT3TIGRfam:TIGR00820TIGRFAMs:TIGR00820TMHMM:TMhelix
UniGene:At.66932UniProt:Q8LE59
Coordinates (TAIR10) chr1:-:22445410..22447060
Molecular Weight (calculated) 45091.60 Da
IEP (calculated) 6.69
GRAVY (calculated) 0.43
Length 425 amino acids
Sequence (TAIR10)
(BLAST)
001: MFFVDVLWKL VPLYLFGSET KSLSATESIL QIVPEAMAAT SSNVLCNASE SDLCRDDSAA FLLKFVAIAS ILLAGAAGVT IPLIGRNRRF LQTDGNLFVT
101: AKAFAAGVIL ATGFVHMLAG GTEALKNPCL PDFPWSKFPF PGFFAMIAAL ITLFVDFMGT QYYERKQERE ASESVEPFGR EQSPGIVVPM IGEGTNDGKV
201: FGEEDSGGIH IVGIHAHAAH HRHSHPPGHD SCEGHSKIDI GHAHAHGHGH GHGHGHVHGG LDAVNGARHI VVSQVLELGI VSHSIIIGLS LGVSQSPCTI
301: RPLIAALSFH QFFEGFALGG CISQAQFRNK SATIMACFFA LTTPIGIGIG TAVASSFNSH SVGALVTEGI LDSLSAGILV YMALVDLIAA DFLSTKMRCN
401: FRLQIVSYVM LFLGAGLMSS LAIWA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)