AT1G60960.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plasma membrane 1.000 ASURE: plasma membrane What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : iron regulated transporter 3 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
Encodes a plasma membrane localized zinc/iron transporter. | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
iron regulated transporter 3 (IRT3); FUNCTIONS IN: cation transmembrane transporter activity, zinc ion transmembrane transporter activity, metal ion transmembrane transporter activity, iron ion transmembrane transporter activity; INVOLVED IN: cation transport, zinc ion transport, response to nematode, iron ion transport, metal ion transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Zinc/iron permease, fungal/plant (InterPro:IPR004698), Zinc/iron permease (InterPro:IPR003689); BEST Arabidopsis thaliana protein match is: zinc transporter 4 precursor (TAIR:AT1G10970.1); Has 3842 Blast hits to 3068 proteins in 499 species: Archae - 2; Bacteria - 683; Metazoa - 1421; Fungi - 659; Plants - 616; Viruses - 7; Other Eukaryotes - 454 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:-:22445410..22447060 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 45091.60 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 6.69 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | 0.43 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 425 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MFFVDVLWKL VPLYLFGSET KSLSATESIL QIVPEAMAAT SSNVLCNASE SDLCRDDSAA FLLKFVAIAS ILLAGAAGVT IPLIGRNRRF LQTDGNLFVT 101: AKAFAAGVIL ATGFVHMLAG GTEALKNPCL PDFPWSKFPF PGFFAMIAAL ITLFVDFMGT QYYERKQERE ASESVEPFGR EQSPGIVVPM IGEGTNDGKV 201: FGEEDSGGIH IVGIHAHAAH HRHSHPPGHD SCEGHSKIDI GHAHAHGHGH GHGHGHVHGG LDAVNGARHI VVSQVLELGI VSHSIIIGLS LGVSQSPCTI 301: RPLIAALSFH QFFEGFALGG CISQAQFRNK SATIMACFFA LTTPIGIGIG TAVASSFNSH SVGALVTEGI LDSLSAGILV YMALVDLIAA DFLSTKMRCN 401: FRLQIVSYVM LFLGAGLMSS LAIWA |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)