suba logo
AT1G10970.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plasma membrane 0.607
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : zinc transporter 4 precursor
Curator
Summary (TAIR10)
A member of Zrt- and Irt-related protein (ZIP) family. transcript is induced in response to zinc deficiency in the root and shoot. Expression is regulated by copper, but response to copper deficiency is detected only after three weeks of deficiency.
Computational
Description (TAIR10)
zinc transporter 4 precursor (ZIP4); CONTAINS InterPro DOMAIN/s: Zinc/iron permease, fungal/plant (InterPro:IPR004698), Zinc/iron permease (InterPro:IPR003689); BEST Arabidopsis thaliana protein match is: iron regulated transporter 3 (TAIR:AT1G60960.1); Has 2241 Blast hits to 2085 proteins in 351 species: Archae - 0; Bacteria - 278; Metazoa - 580; Fungi - 588; Plants - 521; Viruses - 0; Other Eukaryotes - 274 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111GP2eggNOG:KOG1558EMBL:AK221596EMBL:CP002684
EMBL:U95973EnsemblPlants:AT1G10970EnsemblPlants:AT1G10970.1entrez:837640
GeneID:837640Genevisible:O04089GO:GO:0005385GO:GO:0009535
GO:GO:0016021Gramene:AT1G10970.1hmmpanther:PTHR11040hmmpanther:PTHR11040:SF44
HOGENOM:HOG000157076InParanoid:O04089InterPro:IPR003689InterPro:IPR004698
KEGG:ath:AT1G10970KO:K14709PaxDb:O04089Pfam:O04089
Pfam:PF02535PhylomeDB:O04089PIR:F86243PRIDE:O04089
PRO:PR:O04089ProteinModelPortal:O04089Proteomes:UP000006548RefSeq:NP_172566.2
STRING:3702.AT1G10970.1TAIR:AT1G10970tair10-symbols:ATZIP4tair10-symbols:ZIP4
TIGRfam:TIGR00820TIGRFAMs:TIGR00820TMHMM:TMhelixUniGene:At.27895
UniProt:O04089
Coordinates (TAIR10) chr1:-:3665201..3666933
Molecular Weight (calculated) 43173.30 Da
IEP (calculated) 6.59
GRAVY (calculated) 0.45
Length 408 amino acids
Sequence (TAIR10)
(BLAST)
001: MIFVDVLWKL FPLYSFGSGR DSLSESILQI IPETMASSTT KILCDAGESD LCRDDSAAFL LKFVAIASIL LAGAAGVAIP LIGRNRRFLQ TEGNLFVAAK
101: AFAAGVILAT GFVHMLAGGT EALSNPCLPD FPWSKFPFPG FFAMVAALAT LLVDFMGTQY YERKQERNQA ATEAAAGSEE IAVVPVVGER VTDNKVFGEE
201: DGGGIHIVGI RAHAAHHRHS HSNSHGTCDG HAHGHSHGHM HGNSDVENGA RHVVVSQILE LGIVSHSIII GLSLGVSQSP CTIRPLIAAL SFHQFFEGFA
301: LGGCISQAQF RNKSATIMAC FFALTTPLGI GIGTAVASSF NSHSPGALVT EGILDSLSAG ILVYMALVDL IAADFLSKRM SCNLRLQVVS YVMLFLGAGL
401: MSALAIWA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)