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AT1G08460.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : histone deacetylase 8
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
histone deacetylase 8 (HDA08); CONTAINS InterPro DOMAIN/s: Histone deacetylase superfamily (InterPro:IPR000286); BEST Arabidopsis thaliana protein match is: histone deacetylase 5 (TAIR:AT5G61060.1); Has 9025 Blast hits to 8820 proteins in 1442 species: Archae - 223; Bacteria - 3178; Metazoa - 1474; Fungi - 641; Plants - 477; Viruses - 0; Other Eukaryotes - 3032 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G08460-MONOMERBioGrid:22607EC:3.5.1.98eggNOG:COG0123
eggNOG:KOG1343EMBL:AC006932EMBL:AF410272EMBL:AF428369
EMBL:AF510167EMBL:AY097371EMBL:CP002684EnsemblPlants:AT1G08460
EnsemblPlants:AT1G08460.1entrez:837366Gene3D:3.40.800.20GeneID:837366
Genevisible:Q94EJ2GO:GO:0005634GO:GO:0006351GO:GO:0006355
GO:GO:0032041Gramene:AT1G08460.1hmmpanther:PTHR10625hmmpanther:PTHR10625:SF121
HOGENOM:HOG000225183InParanoid:Q94EJ2InterPro:IPR000286InterPro:IPR023801
KEGG:ath:AT1G08460OMA:REICLEHPANTHER:PTHR10625PaxDb:Q94EJ2
Pfam:PF00850Pfam:Q94EJ2PhylomeDB:Q94EJ2PIR:G86217
PRIDE:Q94EJ2PRINTS:PR01270PRO:PR:Q94EJ2ProteinModelPortal:Q94EJ2
Proteomes:UP000006548RefSeq:NP_563817.1SMR:Q94EJ2STRING:3702.AT1G08460.1
SUPFAM:SSF52768TAIR:AT1G08460tair10-symbols:ATHDA8tair10-symbols:HDA08
tair10-symbols:HDA8UniGene:At.26246UniProt:Q94EJ2
Coordinates (TAIR10) chr1:+:2672527..2674469
Molecular Weight (calculated) 41265.00 Da
IEP (calculated) 5.61
GRAVY (calculated) -0.14
Length 377 amino acids
Sequence (TAIR10)
(BLAST)
001: MVTNRVDVFW HEGMLRHDAV EGVFDTGYDP GFLDVLEKHP ENADRVRNML SILRRGPIAP HVNWFTGLPA IVSELLMFHT SEYIEKLVEA DKSGERCEIA
101: AGTFMSPGSW EAALLAAGTT LSAMQHILDC HGKIAYALVR PPGHHSQPTQ ADGYCFLNNA ALAVKLALNS GSCSRVAVID IDVHYGNGTA EGFYTSDKVL
201: TVSLHMNHGS WGSSHPQKGS IDELGEDVGL GYNLNVPLPN GTGDRGYEYA MNELVVPAVR RFGPDMVVLV VGQDSSAFDP NGRQSLTMNG YRRIGQIMRG
301: VAEEHSHGRL LMVQEGGYHV TYAAYCLHAM LEGVLKIPEP HLSDPIAYYP EEEANAVAAV ESIKTYHTEF VPFLRGT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)