AT2G46900.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix, Nulp1-type (InterPro:IPR006994); Has 2929 Blast hits to 2464 proteins in 333 species: Archae - 2; Bacteria - 151; Metazoa - 913; Fungi - 372; Plants - 141; Viruses - 47; Other Eukaryotes - 1303 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:19269678..19271987 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 71425.20 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.51 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.78 | ||||||||||||||||||||||||||||||||
| Length | 627 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSGRLLKKVL QEHEDSKLQK HHEEEEEEDE EESGARSSIN PFDLLNDGDE DPEEIDDETI AEKKNEDADH QSSVADHVQP VSKNKSKKKK KKKNKESGSN 101: VPKAEMTLDE TLEALGLNAN SKQDKVQETK PNADSSKKAS SRFVLEIDSK YLNLENELRR TYGSKAMRSF ESESGSQGGS SSRRGGRRGV HHITKTVLVS 201: PKENWSRWDR SFSMEFLETK DGNNYFRYTH SSSYEQAQRA FQAAQAIHDL NGVASVLIHN PYHIESLITM ADYFKFVGEN DMAADSIGKC LYGLERAWHP 301: MFTPFQGNCR LEFNHDENKL FFKTLFTHMR NMDRRGCHRS ALEVCKLLLS LDTSNPVGAL FCVDYFALRA EEYAWLEQFS EEYRNDNSLW LFPNFSYSLA 401: IARVYLEKME PTSSSEATPR DTSKQSSLDL MTQALKLHPT VLNKLVEKVP LKDQAWTKIL KHSYFRSDES KIPSLDHLIK IYVERNYLIW RLPDVQKLLR 501: SAADLVIESL EQDGTEAESW LCVRLEAFSS ENNQYSHLST HDFSDSMPTL PPDNLQNFVA DPRMVGGEQM AEGGGRGQHQ APPPRPRDLA NRSPLAVLIE 601: SILPWANFGD GEDEIAHDAH HQPDNNG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)