AT5G14080.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G64320.1); Has 28709 Blast hits to 10499 proteins in 259 species: Archae - 3; Bacteria - 9; Metazoa - 215; Fungi - 279; Plants - 27316; Viruses - 0; Other Eukaryotes - 887 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:4543265..4545256 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 71367.70 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.79 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.04 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 634 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRPATELAVR IGRELLKVSG SSRAARIWSP LIEQSLHGLG FRHSISPSLV ARVIDPFLLN HHSLALGFFN WAAQQPGYSH DSISYHSIFK SLSLSRQFSA 101: MDALFKQVKS NKILLDSSVY RSLIDTLVLG RKAQSAFWVL EEAFSTGQEI HPDVCNRLLA GLTSDGCYDY AQKLFVKMRH KGVSLNTLGF GVYIGWFCRS 201: SETNQLLRLV DEVKKANLNI NGSIIALLIL HSLCKCSREM DAFYILEELR NIDCKPDFMA YRVIAEAFVV TGNLYERQVV LKKKRKLGVA PRSSDYRAFI 301: LDLISAKRLT EAKEVAEVIV SGKFPMDNDI LDALIGSVSA VDPDSAVEFL VYMVSTGKLP AIRTLSKLSK NLCRHDKSDH LIKAYELLSS KGYFSELQSY 401: SLMISFLCKA GRVRESYTAL QEMKKEGLAP DVSLYNALIE ACCKAEMIRP AKKLWDEMFV EGCKMNLTTY NVLIRKLSEE GEAEESLRLF DKMLERGIEP 501: DETIYMSLIE GLCKETKIEA AMEVFRKCME RDHKTVTRRV LSEFVLNLCS NGHSGEASQL LREREHLEHT GAHVVLLKCV ADAKEVEIGI RHMQWIKEVS 601: PSLVHTISSD LLASFCSSSD PDSILPFIRA IENT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)