AT1G05840.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Eukaryotic aspartyl protease family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Eukaryotic aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: anchored to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase aspartic (InterPro:IPR021109), Peptidase A1 (InterPro:IPR001461); BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT3G02740.1); Has 3016 Blast hits to 2994 proteins in 298 species: Archae - 0; Bacteria - 0; Metazoa - 466; Fungi - 565; Plants - 1776; Viruses - 0; Other Eukaryotes - 209 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:1762843..1766150 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 53300.10 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.05 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.00 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 485 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTLSIVSFPI CGRFTLIWFL TALVSVSCNP GVFNVKYRYP RLQGSLTALK EHDDRRQLTI LAGIDLPLGG TGRPDIPGLY YAKIGIGTPA KSYYVQVDTG 101: SDIMWVNCIQ CKQCPRRSTL GIELTLYNID ESDSGKLVSC DDDFCYQISG GPLSGCKANM SCPYLEIYGD GSSTAGYFVK DVVQYDSVAG DLKTQTANGS 201: VIFGCGARQS GDLDSSNEEA LDGILGFGKA NSSMISQLAS SGRVKKIFAH CLDGRNGGGI FAIGRVVQPK VNMTPLVPNQ PHYNVNMTAV QVGQEFLTIP 301: ADLFQPGDRK GAIIDSGTTL AYLPEIIYEP LVKKITSQEP ALKVHIVDKD YKCFQYSGRV DEGFPNVTFH FENSVFLRVY PHDYLFPHEG MWCIGWQNSA 401: MQSRDRRNMT LLGDLVLSNK LVLYDLENQL IGWTEYNCSS SIKVKDEGTG TVHLVGSHFI SSALPLDTSM CLLFSLLLLM TLFLL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)