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AT4G26400.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to chitin; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G56340.1); Has 10466 Blast hits to 10426 proteins in 293 species: Archae - 0; Bacteria - 6; Metazoa - 2695; Fungi - 997; Plants - 5209; Viruses - 70; Other Eukaryotes - 1489 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG41121N2eggNOG:KOG0800EMBL:AK317517EMBL:AY099807
EMBL:BT000305EMBL:CP002687EnsemblPlants:AT4G26400EnsemblPlants:AT4G26400.1
EnsemblPlants:AT4G26400.2entrez:828746Gene3D:3.30.40.10GeneID:828746
GO:GO:0008270GO:GO:0010200Gramene:AT4G26400.1Gramene:AT4G26400.2
hmmpanther:PTHR22763hmmpanther:PTHR22763:SF59HOGENOM:HOG000237766InterPro:IPR001841
InterPro:IPR013083KEGG:ath:AT4G26400OMA:ERRFSFPPfam:PF13639
Pfam:PF14369Pfscan:PS50089PhylomeDB:Q8L5Z3PROSITE:PS50089
Proteomes:UP000006548RefSeq:NP_194370.2RefSeq:NP_849554.1SMART:SM00184
SMR:Q8L5Z3STRING:3702.AT4G26400.1SUPFAM:SSF57850TAIR:AT4G26400
UniGene:At.45862UniProt:Q8L5Z3
Coordinates (TAIR10) chr4:-:13344953..13346023
Molecular Weight (calculated) 40207.80 Da
IEP (calculated) 6.19
GRAVY (calculated) -0.67
Length 356 amino acids
Sequence (TAIR10)
(BLAST)
001: MSARYWCHMC SQMVNPVIGA EIKCPFCQSG FVEEMSREIN GGSSSSLREV QDPEIDFGTD RALSLWGPIL LGMMSNPRRR RRFRRTEFGV DNDEVNVSDD
101: VDGNDSVDID RHHHRRHRHR QQGREIDLDR EFESILRRRR RSSATILQLL QGIRAGIASE YESSDRDLLN QSAVVQGSTS LNQNRNNTSL SAIGDYFVGS
201: SLDHLLEHLA DNDSIRHGSL PARKEVVDNL PTVKISESLQ CSICLDDFDK GSEAKEMPCK HKFHIRCIVP WLELHSSCPV CRYELPPDDE TKVNPVRPRT
301: RTLEINVSNE NVEDDARNSN VSERRFSFPW PFSGLFSSSS SSSASASGSS HLGENS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)