AT4G20380.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.987 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : LSD1 zinc finger family protein | ||||||||
| Curator Summary (TAIR10) |
LSD1 monitors a superoxide-dependent signal and negatively regulates a plant cell death pathway. contains zinc-finger motifs. LSD1 negatively regulates a basal defense pathway that can act upstream or independently of both NIM1/NPR1 function and SA accumulation following avirulent or virulent pathogen challenge | ||||||||
| Computational Description (TAIR10) |
LESION SIMULATING DISEASE (LSD1); CONTAINS InterPro DOMAIN/s: Zinc finger, LSD1-type (InterPro:IPR005735); BEST Arabidopsis thaliana protein match is: lsd one like 1 (TAIR:AT1G32540.1); Has 361 Blast hits to 293 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 49; Fungi - 0; Plants - 249; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink). | ||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:11005027..11006438 | ||||||||
| Molecular Weight (calculated) | 19563.70 Da | ||||||||
| IEP (calculated) | 8.44 | ||||||||
| GRAVY (calculated) | -0.14 | ||||||||
| Length | 184 amino acids | ||||||||
| Sequence (TAIR10) (BLAST) |
001: MQDQLVCHGC RNLLMYPRGA SNVRCALCNT INMVPPPPPP HDMAHIICGG CRTMLMYTRG ASSVRCSCCQ TTNLVPAHSN QVAHAPSSQV AQINCGHCRT 101: TLMYPYGASS VKCAVCQFVT NVNMSNGRVP LPTNRPNGTA CPPSTSTSTP PSQTQTVVVE NPMSVDESGK LVSNVVVGVT TDKK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)