AT1G70590.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 0.976 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : F-box family protein | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
F-box family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Sel1-like (InterPro:IPR006597); BEST Arabidopsis thaliana protein match is: HCP-like superfamily protein (TAIR:AT1G18260.1); Has 16059 Blast hits to 6577 proteins in 1289 species: Archae - 0; Bacteria - 11525; Metazoa - 502; Fungi - 723; Plants - 391; Viruses - 15; Other Eukaryotes - 2903 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:+:26618403..26620159 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 39136.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 10.46 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.49 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 351 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MKQRTWPCRS EGSRFSSLSF LKPHDKDKRS RISSINKATA KSTTSSRSSS SSSSSRPPSN EFGDFSMLPY DILMKIAAPF SHPNLQAASL VCKSWRDALK 101: PLRESMLLIR WGKKYKHGRG GVRANLDKAL DSFLKGAMRG STLAMVDAGL VYWERGEKEK AVNLYRRASE LGDAVGQCNL GIAYLQVQPS NPKEAMKWLK 201: QSAENGYVRA QYQLALCLHH GRVVQTNLLE ATKWYLKAAE GGYVRAMYNI SLCYSVGEGL PQNRKLARKW MKRAADHGHS KAQFEHGLAL FSEGEMLKSV 301: LYLELAERGG EAAATPVKEV VHQQLSATFG GQAVHHAIHQ ANNWRPLPVT R |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)