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AT4G33940.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to chitin; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box protein with domain of unknown function (DUF 1232) (TAIR:AT1G72175.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XTFSeggNOG:KOG2164EMBL:BT021998EMBL:BT024492
EMBL:CP002687EnsemblPlants:AT4G33940EnsemblPlants:AT4G33940.1entrez:829539
Gene3D:3.30.40.10GeneID:829539GO:GO:0008270GO:GO:0010200
GO:GO:0016021Gramene:AT4G33940.1InterPro:IPR001841InterPro:IPR013083
InterPro:IPR017907InterPro:IPR018957KEGG:ath:AT4G33940ncoils:Coil
OMA:DICAIATPfam:PF00097Pfscan:PS50089PhylomeDB:Q501G9
PROSITE:PS00518PROSITE:PS50089Proteomes:UP000006548RefSeq:NP_567943.1
scanprosite:PS00518SMART:SM00184SMR:Q501G9STRING:3702.AT4G33940.1
SUPFAM:SSF57850TAIR:AT4G33940TMHMM:TMhelixUniGene:At.31536
UniProt:Q501G9
Coordinates (TAIR10) chr4:+:16266085..16267612
Molecular Weight (calculated) 30001.20 Da
IEP (calculated) 5.98
GRAVY (calculated) -0.16
Length 262 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSLGSSKSL RDEMEVTTAD VFPEVNAAAV TENLDRNELV LADGVVSAEE RNIEPDNRGE RKIESESPPE DDVCPICFGS FTVPCRGNCG HWYCGNCILQ
101: YWNYAAISRP CKCPMCVRHI TKLSPEPSLQ ERQEQEVKEV LDKVRRYNRL FVGGLTGFVQ KVHELPFLVK RMVWHMMDTD VNNLYFHEVR IFAMFMSTLY
201: TAAEFNFIPT GGFRIVTVFD YAAIAMILIL RLVGIYRRRR LAQQVRHLAA AAIEPELEQR EL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)