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AT3G12400.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Ubiquitin-conjugating enzyme/RWD-like protein
Curator
Summary (TAIR10)
Mutants of this gene were initially identified because of the trichome morphogenesis phenotype. Those trichomes have multiple nuclei, a defect that turns out not to be restricted to the trichomes but also in all endoreduplicating cell types. This gene encodes a ubiquitin-binding protein with sequence similarities with yeast proteins that are components of the ESCRTI-III complexes. The Arabidopsis protein is found associated with the endosome.
Computational
Description (TAIR10)
ELC; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Tumour susceptibility gene 101 (InterPro:IPR008883), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608), Steadiness box (InterPro:IPR017916); BEST Arabidopsis thaliana protein match is: ELCH-like (TAIR:AT5G13860.1); Has 587 Blast hits to 537 proteins in 178 species: Archae - 0; Bacteria - 3; Metazoa - 278; Fungi - 177; Plants - 63; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink).
Protein Annotations
BioGrid:5753eggNOG:ENOG410XT2QeggNOG:KOG2391EMBL:AC069474
EMBL:AP002047EMBL:AY056283EMBL:AY087782EMBL:AY133779
EMBL:CP002686EnsemblPlants:AT3G12400EnsemblPlants:AT3G12400.1entrez:820419
Gene3D:3.10.110.10GeneID:820419Genevisible:Q9LHG8GO:GO:0000813
GO:GO:0005769GO:GO:0005770GO:GO:0006464GO:GO:0010091
GO:GO:0015031GO:GO:0043130GO:GO:0043234GO:GO:0051301
Gramene:AT3G12400.1hmmpanther:PTHR23306hmmpanther:PTHR23306:SF3HOGENOM:HOG000030046
InParanoid:Q9LHG8IntAct:Q9LHG8InterPro:IPR008883InterPro:IPR016135
InterPro:IPR017916KEGG:ath:AT3G12400KO:K12183ncoils:Coil
OMA:IWLPEPYPaxDb:Q9LHG8Pfam:PF05743Pfam:PF09454
Pfam:Q9LHG8Pfscan:PS51312Pfscan:PS51322PhylomeDB:Q9LHG8
PRIDE:Q9LHG8PRO:PR:Q9LHG8PROSITE:PS51312PROSITE:PS51322
ProteinModelPortal:Q9LHG8Proteomes:UP000006548RefSeq:NP_566423.1SMR:Q9LHG8
STRING:3702.AT3G12400.1SUPFAM:SSF140111SUPFAM:SSF54495TAIR:AT3G12400
tair10-symbols:ATELCtair10-symbols:ELCUniGene:At.17435UniGene:At.67881
UniProt:Q9LHG8
Coordinates (TAIR10) chr3:-:3944600..3945796
Molecular Weight (calculated) 44718.20 Da
IEP (calculated) 6.24
GRAVY (calculated) -0.42
Length 398 amino acids
Sequence (TAIR10)
(BLAST)
001: MVPPPSNPQQ VQQFLSSALS QRGPSSVPYE ESNKWLIRQH LLNLISSYPS LEPKTASFMH NDGRSVNLLQ ADGTIPMPFH GVTYNIPVII WLLESYPRHP
101: PCVYVNPTAD MIIKRPHAHV TPSGLVSLPY LQNWVYPSSN LVDLVSDLSA AFARDPPLYS RRRPQPPPPS PPTVYDSSLS RPPSADQSLP RPFPPSPYGG
201: GVSRVQVQHV HHQQQSDDAA EVFKRNAINK MVEMVHSDLV SMRRAREAEA EELLSLQAGL KRREDELNIG LKEMVEEKET LEQQLQIISM NTDILDSWVR
301: ENQGKTKNLV DLDVDNAFEC GDTLSKQMLE CTALDLAIED AIYSLDKSFQ DGVVPFDQYL RNVRLLSREQ FFHRATGSKV RAAQMEVQVA AIAGRLHS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)