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AT3G53120.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.929
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Modifier of rudimentary (Mod(r)) protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
VPS37-1; CONTAINS InterPro DOMAIN/s: Modifier of rudimentary, Modr (InterPro:IPR009851); BEST Arabidopsis thaliana protein match is: Modifier of rudimentary (Mod(r)) protein (TAIR:AT2G36680.1); Has 448 Blast hits to 448 proteins in 101 species: Archae - 0; Bacteria - 6; Metazoa - 285; Fungi - 19; Plants - 79; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink).
Protein Annotations
BioGrid:9795eggNOG:ENOG4111UJNeggNOG:KOG3270EMBL:AL132958
EMBL:BX822324EMBL:CP002686EnsemblPlants:AT3G53120EnsemblPlants:AT3G53120.1
entrez:824478GeneID:824478GO:GO:0000813GO:GO:0015031
Gramene:AT3G53120.1hmmpanther:PTHR13678HOGENOM:HOG000239803InParanoid:Q9SCP9
IntAct:Q9SCP9InterPro:IPR009851KEGG:ath:AT3G53120KO:K12185
ncoils:CoilOMA:KDDIMRSPaxDb:Q9SCP9Pfam:PF07200
Pfam:Q9SCP9Pfscan:PS51314PhylomeDB:Q9SCP9PIR:T46158
PRIDE:Q9SCP9PRO:PR:Q9SCP9PROSITE:PS51314ProteinModelPortal:Q9SCP9
Proteomes:UP000006548RefSeq:NP_190880.1SMR:Q9SCP9STRING:3702.AT3G53120.1
SUPFAM:SSF140111TAIR:AT3G53120tair10-symbols:VPS37-1UniGene:At.35224
UniGene:At.675UniProt:Q9SCP9
Coordinates (TAIR10) chr3:-:19690729..19692490
Molecular Weight (calculated) 24941.50 Da
IEP (calculated) 7.60
GRAVY (calculated) -0.77
Length 217 amino acids
Sequence (TAIR10)
(BLAST)
001: MFNFWGSKDQ QQGQSRPQEA SSQSPWYSPS LVSSPSSSRP QSSGQISAQV SPGEAAGIIV FLKDKSVDEL RKLLSDKDAY QQFLLSLDQV KVQNNIKDEL
101: RRETLQLARD NLEKEPQIME LRNQCRIIRT TELATAQEKL NELERQKEEI LKFYSPGSLL HKLQEAMNQV DEESEALQEK FLEKEIDTAA FVQKYKKLRT
201: TYHRRALIHL AAKTSNI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)