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AT2G06530.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 0.634
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31541795 (2020): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : SNF7 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
VPS2.1; CONTAINS InterPro DOMAIN/s: Snf7 (InterPro:IPR005024); BEST Arabidopsis thaliana protein match is: vacuolar protein sorting-associated protein 2.3 (TAIR:AT1G03950.1); Has 2524 Blast hits to 2516 proteins in 271 species: Archae - 17; Bacteria - 20; Metazoa - 1106; Fungi - 512; Plants - 555; Viruses - 5; Other Eukaryotes - 309 (source: NCBI BLink).
Protein Annotations
BioGrid:606eggNOG:COG5491eggNOG:KOG3230EMBL:AC006420
EMBL:AJ628449EMBL:AJ628450EMBL:AJ628451EMBL:AJ628452
EMBL:AJ628453EMBL:AJ628454EMBL:AJ628455EMBL:AJ628456
EMBL:AJ628457EMBL:AJ628458EMBL:AJ628459EMBL:AJ628460
EMBL:AJ628461EMBL:AJ628462EMBL:AJ628463EMBL:AJ628464
EMBL:AJ628465EMBL:AJ628466EMBL:AJ628467EMBL:AJ628468
EMBL:AJ628469EMBL:AJ628470EMBL:AJ628471EMBL:AJ628472
EMBL:AJ628473EMBL:AJ628474EMBL:AJ628475EMBL:AJ628476
EMBL:AJ628477EMBL:AJ628478EMBL:AJ628479EMBL:AJ628480
EMBL:AJ628481EMBL:AJ628482EMBL:AJ628483EMBL:AJ628484
EMBL:AJ628485EMBL:AJ628486EMBL:AJ628487EMBL:AJ628488
EMBL:AJ628489EMBL:AJ628490EMBL:AJ628491EMBL:AJ628492
EMBL:AJ628493EMBL:AJ628494EMBL:AJ628495EMBL:AJ628496
EMBL:AJ628497EMBL:AJ628498EMBL:AJ628499EMBL:AJ628500
EMBL:AJ628501EMBL:AJ628502EMBL:AJ628503EMBL:AJ628504
EMBL:AJ628505EMBL:AJ628506EMBL:AJ628507EMBL:AJ628508
EMBL:AJ628509EMBL:AJ628510EMBL:AJ628511EMBL:AJ628512
EMBL:AJ628513EMBL:AJ628514EMBL:AJ628515EMBL:AJ628516
EMBL:AJ628517EMBL:AJ628518EMBL:AJ628519EMBL:AJ628520
EMBL:AJ628521EMBL:AJ628522EMBL:AJ628523EMBL:AJ628524
EMBL:AJ628525EMBL:AJ628526EMBL:AJ628527EMBL:AJ628528
EMBL:AJ628529EMBL:AJ628530EMBL:AJ628531EMBL:AJ628532
EMBL:AJ628533EMBL:AJ628534EMBL:AJ628535EMBL:AJ628536
EMBL:AJ628537EMBL:AJ628538EMBL:AJ628539EMBL:AJ628540
EMBL:AJ628541EMBL:AJ628542EMBL:AJ628543EMBL:AJ628544
EMBL:AJ628545EMBL:AJ628546EMBL:AY088685EMBL:AY090953
EMBL:CP002685EnsemblPlants:AT2G06530EnsemblPlants:AT2G06530.1entrez:815211
GeneID:815211Genevisible:Q9SKI2GO:GO:0000815GO:GO:0005770
GO:GO:0005771GO:GO:0007034GO:GO:0015031GO:GO:0070676
Gramene:AT2G06530.1hmmpanther:PTHR10476hmmpanther:PTHR10476:SF12InParanoid:Q9SKI2
IntAct:Q9SKI2InterPro:IPR005024KEGG:ath:AT2G06530KO:K12191
ncoils:CoilOMA:QSEMMDMPaxDb:Q9SKI2Pfam:PF03357
Pfam:Q9SKI2PhylomeDB:Q9SKI2PIR:D84478PRIDE:Q9SKI2
PRO:PR:Q9SKI2ProteinModelPortal:Q9SKI2Proteomes:UP000006548Reactome:R-ATH-1632852
Reactome:R-ATH-432720Reactome:R-ATH-917729RefSeq:NP_565336.1SMR:Q9SKI2
STRING:3702.AT2G06530.1TAIR:AT2G06530tair10-symbols:VPS2.1UniGene:At.20774
UniProt:Q9SKI2
Coordinates (TAIR10) chr2:-:2588740..2590285
Molecular Weight (calculated) 25293.60 Da
IEP (calculated) 5.29
GRAVY (calculated) -0.67
Length 225 amino acids
Sequence (TAIR10)
(BLAST)
001: MMNSIFGKRK TPAELLRENK RMLDKSIREI ERERQGLQTQ EKKLINEIKK TAKQGQMGAV KVMAKDLIRT RHQIEKFYKL KSQLQGVSLR IQTLKSTQAM
101: GEAMKGVTKA MGQMNRQMNL PSLQKIMQEF ERQNEKMEMV SEVMGDAIDD ALEGDEEEEE TEDLVSQVLD EIGIDINQEL VNAPSGAVAV PAAKNKVVQA
201: EATGAEDSGG IDSDLQARLD NLRKM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)