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AT4G29160.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24030099 (2013): plasma membrane
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : SNF7 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SNF7.1; CONTAINS InterPro DOMAIN/s: Snf7 (InterPro:IPR005024); BEST Arabidopsis thaliana protein match is: SNF7 family protein (TAIR:AT2G19830.1); Has 1847 Blast hits to 1847 proteins in 245 species: Archae - 2; Bacteria - 29; Metazoa - 703; Fungi - 444; Plants - 428; Viruses - 0; Other Eukaryotes - 241 (source: NCBI BLink).
Protein Annotations
BioGrid:14324eggNOG:ENOG410YE9IeggNOG:KOG1656EMBL:AL078470
EMBL:AL161574EMBL:AY042853EMBL:AY072490EMBL:AY088519
EMBL:CP002687EnsemblPlants:AT4G29160EnsemblPlants:AT4G29160.1EnsemblPlants:AT4G29160.3
entrez:829037GeneID:829037Genevisible:Q9SZE4GO:GO:0000815
GO:GO:0007034GO:GO:0015031GO:GO:0070676hmmpanther:PTHR22761
hmmpanther:PTHR22761:SF8HOGENOM:HOG000209960InParanoid:Q9SZE4IntAct:Q9SZE4
InterPro:IPR005024iPTMnet:Q9SZE4KEGG:ath:AT4G29160KO:K12194
ncoils:CoilOMA:TENMKMIPaxDb:Q9SZE4Pfam:PF03357
Pfam:Q9SZE4PhylomeDB:Q9SZE4PIR:T08971PRIDE:Q9SZE4
PRO:PR:Q9SZE4ProteinModelPortal:Q9SZE4Proteomes:UP000006548Reactome:R-ATH-1632852
Reactome:R-ATH-917729RefSeq:NP_001078468.1RefSeq:NP_194645.1RefSeq:NP_974635.1
SMR:Q9SZE4STRING:3702.AT4G29160.1TAIR:AT4G29160tair10-symbols:SNF7.1
UniGene:At.3412UniProt:Q9SZE4
Coordinates (TAIR10) chr4:+:14381019..14382342
Molecular Weight (calculated) 24334.20 Da
IEP (calculated) 4.59
GRAVY (calculated) -0.66
Length 219 amino acids
Sequence (TAIR10)
(BLAST)
001: MMNRLFGKPK QEANALQTLD KLNETLEMLE KKEKVLLKKA GAEVEKAKEY SRAKNKRAAI QCLKRKRLYE GQVEQLGNFQ LRIHDQMIML EGAKATTETV
101: DALRSGASAM KAMQKATNID DVDKTMDEIN EQTENMKQIQ EALATPMGAA ADFDEDELAA ELDELESEEL ESQLLQPATT APPLPSVPVP AGRQPARPVP
201: QKRTAEEEEL AALQAEMAL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)