AT2G10950.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : BSD domain-containing protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
BSD domain-containing protein; CONTAINS InterPro DOMAIN/s: BSD (InterPro:IPR005607); BEST Arabidopsis thaliana protein match is: BSD domain-containing protein (TAIR:AT3G49800.1); Has 187 Blast hits to 175 proteins in 30 species: Archae - 0; Bacteria - 2; Metazoa - 28; Fungi - 3; Plants - 134; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:4315534..4317800 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 37337.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 4.38 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.67 | ||||||||||||||||||||||||||||
| Length | 336 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSWLFKSRGD DDHDPDPDPS TTHGGVKEDL SSLLRGVAAF LAPPPSPPVN ERRLSSDNSP TQLGLLGIRN DLAEIRGNFS NFASNLLQFP SNLRDRESSR 101: RSPLNDQVPG ISEEVVDFAV KISTKPGCWT DFPLSLDTEF ELSEAQRAHA SAIEDLVPGL VAVKNQVSSY MDDEHFWLIY FILLMPRLNG HDFELLATCK 201: VFETRDQLLL KLQKKETGSS KSTTGHETPE EGSSRETETV EGVIDKIETL KIEQREISDE SSEEQRRSFR DEEVISFSDL DVDDLSEKPS PNRSTLKRPA 301: SNASGSSWVQ LSKSQVGHSK DSEGDSSDWL PIGDSD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)