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AT5G23090.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : nuclear factor Y, subunit B13
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
nuclear factor Y, subunit B13 (NF-YB13); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit B12 (TAIR:AT5G08190.1); Has 1491 Blast hits to 1491 proteins in 242 species: Archae - 0; Bacteria - 0; Metazoa - 490; Fungi - 374; Plants - 520; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5150eggNOG:KOG0871EMBL:AB006708EMBL:AY057709
EMBL:AY116960EMBL:CP002688EMBL:D38110EnsemblPlants:AT5G23090
EnsemblPlants:AT5G23090.1EnsemblPlants:AT5G23090.2entrez:832373ExpressionAtlas:P49592
Gene3D:1.10.20.10GeneID:832373Genevisible:P49592GO:GO:0003700
GO:GO:0005634GO:GO:0006351GO:GO:0006355hmmpanther:PTHR11064
hmmpanther:PTHR11064:SF35HOGENOM:HOG000178641InParanoid:P49592InterPro:IPR003958
InterPro:IPR009072OMA:YETMQDTPaxDb:P49592Pfam:P49592
Pfam:PF00808PhylomeDB:P49592PIR:S53582PRIDE:P49592
PRO:PR:P49592ProteinModelPortal:P49592Proteomes:UP000006548RefSeq:NP_851060.1
RefSeq:NP_851061.1SMR:B9DHA9SMR:P49592STRING:3702.AT5G23090.1
SUPFAM:SSF47113TAIR:AT5G23090tair10-symbols:NF-YB13UniGene:At.270
UniProt:B9DHA9UniProt:P49592
Coordinates (TAIR10) chr5:+:7749391..7750203
Molecular Weight (calculated) 17943.20 Da
IEP (calculated) 4.46
GRAVY (calculated) -0.68
Length 159 amino acids
Sequence (TAIR10)
(BLAST)
001: MDPMDIVGKS KEDASLPKAT MTKIIKEMLP PDVRVARDAQ DLLIECCVEF INLVSSESND VCNKEDKRTI APEHVLKALQ VLGFGEYIEE VYAAYEQHKY
101: ETMQDTQRSV KWNPGAQMTE EEAAAEQQRM FAEARARMNG GVSVPQPEHP ETDQRSPQS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)