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AT5G52210.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : GTP-binding protein 1
Curator
Summary (TAIR10)
A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases.
Computational
Description (TAIR10)
GTP-binding protein 1 (GB1); FUNCTIONS IN: GTP binding; INVOLVED IN: small GTPase mediated signal transduction; LOCATED IN: endomembrane system, intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ADP-ribosylation factor (InterPro:IPR006688), Small GTP-binding protein (InterPro:IPR005225), ARF/SAR superfamily (InterPro:IPR006689); BEST Arabidopsis thaliana protein match is: ADP-ribosylation factor A1F (TAIR:AT1G10630.1); Has 10316 Blast hits to 10296 proteins in 478 species: Archae - 30; Bacteria - 165; Metazoa - 4935; Fungi - 1433; Plants - 1618; Viruses - 0; Other Eukaryotes - 2135 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410ZMDVeggNOG:KOG0076EMBL:AB025603EMBL:AK227533
EMBL:BT004590EMBL:CP002688EMBL:U46924EnsemblPlants:AT5G52210
EnsemblPlants:AT5G52210.1EnsemblPlants:AT5G52210.2entrez:835297Gene3D:3.40.50.300
GeneID:835297GO:GO:0005525GO:GO:0005622GO:GO:0007264
Gramene:AT5G52210.1Gramene:AT5G52210.2hmmpanther:PTHR11711hmmpanther:PTHR11711:SF187
HOGENOM:HOG000163691IntAct:Q38921InterPro:IPR005225InterPro:IPR006689
InterPro:IPR024156InterPro:IPR027417KEGG:ath:AT5G52210KO:K07952
OMA:GLWQHVFPfam:PF00025Pfscan:PS51417PhylomeDB:Q38921
PIR:S71584PRINTS:PR00328PROSITE:PS51417Proteomes:UP000006548
RefSeq:NP_200034.1RefSeq:NP_851175.1SMR:Q38921STRING:3702.AT5G52210.1
SUPFAM:SSF52540TAIR:AT5G52210tair10-symbols:ATARLB1tair10-symbols:ATGB1
tair10-symbols:GB1TIGRfam:TIGR00231TIGRFAMs:TIGR00231UniGene:At.7109
UniProt:Q38921
Coordinates (TAIR10) chr5:+:21205567..21206840
Molecular Weight (calculated) 23141.90 Da
IEP (calculated) 5.80
GRAVY (calculated) -0.19
Length 205 amino acids
Sequence (TAIR10)
(BLAST)
001: MFSLMSGLWS YMFSKTEFNV LILGIDKAGK TTFLEKLKTI YSISEGLPHD RIVPTVGLNI GRIEVSNAKI VFWDLGGQPG LRSIWEKYYE EAHALIYLID
101: AACPTRFEDS KSALEKALRH EDLQGAPLLI LANKQDLTNA VSAEELDRYL DLKKLDERVY MFEAVSGYDG RGIKESIEWL VGVMEKSKRT ESLRARAGYT
201: PVPNS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)